Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Mal8g2493 | ATGAGTCCTCCCATGAGTCGGTCTGGTAGTGCTGCAGCTGCAACCTACCGCGGTCCGATGACTCGATCTCGTAGTGCTGCAGCTGCTAACTACGGCCGTCCCATGACTCGTTCTCATACTGCTGCAGCTGCTAACTATGGTTCTCCCATAACTCGTTCTCATATTTCTAGTTTTGCTGCTACTAGAAAGCAAAACACAGTGAAGAGAAAATCTTTTTCAGGAGACCGTGATGGCGAAAAGAAGAAGAAGAAACAAGCAACCACTAGCACCAACAACAAACAGATTCAAAACAAGCCAGAAGAAAACACAAACAACCCTAACACAGGTTTGGAACAAGGTGATTCCTCGAAAAGCTTCAACTGCGGTATATGCTTTGAATATGTAACAAACTCTAATATGTTCACAACCAGTTCATGCAATCATCCATTTTGTACTAATTGCATATCAAAGTATGTGGATGCTGAAAGAGAAAAAAAATTGGTGAAAGTGAATTGTCCAAAGCCAGAATGTTCTGTTGAATTGATACCTGAAAATTTGCAATCCTTTTTACCTAAAAATGTTATTGCTGATTGGGAATCTGCAATTACTGAGTCTTTGAAGGAAAAAAACTACTGCCCTTATAATGATTGTTCGGTCTTATTGGTGAACGACGGCGGGCTAGAGGGTGTTACAAGTTGTGAATGCCATTCTTGTCATAGGCTATTCTGTGCACAATGTAAAGTTCCATGGCACGCAGATATGAATTGTCGCGAATTTCAAGAGTCCAGAGATGAAGAAGAATTGGATAGGAAATTTTTGGAGTTGGCTAAAACTGAAAAGTGGCAGAGATGTCCAAAATGTTCTATGTATGTCCAGAAAATTGAGGGATGTAGCTCCATGGAATGTAGGTTGTATATCTTACCTTTTGTGGCTCATCCTTAA | 921 | 0.4061 | MSPPMSRSGSAAAATYRGPMTRSRSAAAANYGRPMTRSHTAAAANYGSPITRSHISSFAATRKQNTVKRKSFSGDRDGEKKKKKQATTSTNNKQIQNKPEENTNNPNTGLEQGDSSKSFNCGICFEYVTNSNMFTTSSCNHPFCTNCISKYVDAEREKKLVKVNCPKPECSVELIPENLQSFLPKNVIADWESAITESLKEKNYCPYNDCSVLLVNDGGLEGVTSCECHSCHRLFCAQCKVPWHADMNCREFQESRDEEELDRKFLELAKTEKWQRCPKCSMYVQKIEGCSSMECRLYILPFVAHP* | 307 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Mal8g2493 | 306 | ProSitePatterns | Zinc finger RING-type signature. | 139 | 148 | IPR017907 | - | |
| Mal8g2493 | 306 | SUPERFAMILY | RING/U-box | 199 | 255 | - | - | |
| Mal8g2493 | 306 | SMART | ibrneu5 | 189 | 249 | IPR002867 | - | |
| Mal8g2493 | 306 | MobiDBLite | consensus disorder prediction | 88 | 112 | - | - | |
| Mal8g2493 | 306 | MobiDBLite | consensus disorder prediction | 1 | 112 | - | - | |
| Mal8g2493 | 306 | Gene3D | - | 247 | 297 | - | - | |
| Mal8g2493 | 306 | Pfam | IBR domain, a half RING-finger domain | 197 | 249 | IPR002867 | - | |
| Mal8g2493 | 306 | PANTHER | RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING | 68 | 296 | IPR031127 | GO:0004842|GO:0016567 | |
| Mal8g2493 | 306 | SUPERFAMILY | RING/U-box | 263 | 295 | - | - | |
| Mal8g2493 | 306 | SUPERFAMILY | RING/U-box | 115 | 206 | - | - | |
| Mal8g2493 | 306 | ProSiteProfiles | Zinc finger RING-type profile. | 121 | 166 | IPR001841 | - | |
| Mal8g2493 | 306 | ProSiteProfiles | TRIAD supradomain profile. | 117 | 306 | IPR044066 | - | |
| Mal8g2493 | 306 | SMART | ring_2 | 121 | 168 | IPR001841 | - | |
| Mal8g2493 | 306 | MobiDBLite | consensus disorder prediction | 41 | 67 | - | - | |
| Mal8g2493 | 306 | MobiDBLite | consensus disorder prediction | 68 | 86 | - | - | |
| Mal8g2493 | 306 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 114 | 201 | IPR013083 | - | |
| Mal8g2493 | 306 | Pfam | Zinc finger, C3HC4 type (RING finger) | 121 | 167 | IPR018957 | GO:0046872 | |
| Mal8g2493 | 306 | PANTHER | RBR-TYPE E3 UBIQUITIN TRANSFERASE | 68 | 296 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Mal8g2493 | Mal-Chr8 | 56295047 | 56295967 | Dispersed/Transposed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Mal8g2493 | 86 | 296 | C3H Transcription Factor Family | AT2G19610 | 28.889 | 2.41e-24 | 100 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Mal8g2493 | K11975 | - | mtr:MTR_3g462570 | 281.182 |