Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal8g2469 ATGGGTCGTGCAAAAATAGCCATGAAATACATCCATAATGAGAAATCTCGCAAAATGACTTTCAATCAAAGAAAAAAAGGATTAACAACGAAAATTTCCCAATTTACCATCAAGTTTGGAGCAAAAGCTTGCTTGATTGTGTATGATGATGATGGTAATGCGGGACCAATGACATGGCCAGAAGATCCTACAATTGTTAACTCCATGCTTCAAGAATATGAGAATCAAAAGATTAAGAAAACTCCTGAGATATTTGATGTGAACGACTACTTTGAAAATAAGAAAGATGTTGTTGAAGCTAAAATTACCAAAGTGCGTAAAGCTATCTTCAAGAACAAGTATCCAACTTGGCATCCAGATTTCAATAACATGGAAGAGAACCAACTCAGAGACTTCATTGCTACTATAGATGCTAAGATTCAAGCTTGTAATCACAAAATTAACATGCTGAATGGTGAAACTAGTTTCTTGGAAAACAATGCTGACATGACAGATGGTGTTGTTTTCTCACATTCAAACGAAGTAAATGTCATAAGTAGCATCCCTCAAATGCAACTACACACCAAGAGTATTAGTGATTGA 582 0.3522 MGRAKIAMKYIHNEKSRKMTFNQRKKGLTTKISQFTIKFGAKACLIVYDDDGNAGPMTWPEDPTIVNSMLQEYENQKIKKTPEIFDVNDYFENKKDVVEAKITKVRKAIFKNKYPTWHPDFNNMEENQLRDFIATIDAKIQACNHKINMLNGETSFLENNADMTDGVVFSHSNEVNVISSIPQMQLHTKSISD* 194
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal8g2469 193 Gene3D - 13 99 IPR036879 GO:0003677|GO:0046983
Mal8g2469 193 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 53 IPR002100 GO:0003677|GO:0046983
Mal8g2469 193 PANTHER MADS BOX PROTEIN 3 165 - -
Mal8g2469 193 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Mal8g2469 193 PANTHER PROTEIN, PUTATIVE-RELATED 3 165 - -
Mal8g2469 193 SUPERFAMILY SRF-like 1 76 IPR036879 GO:0003677|GO:0046983
Mal8g2469 193 SMART madsneu2 1 61 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal8g2469 Mal-Chr8 55323314 55326031 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal8g2469 1 141 Type I MADS-box Gene Family AT5G55690 30.822 5.14e-16 72.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Mal8g2469 SRF-TF 3.3e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal8g2469 - - mtr:MTR_4g045977 238.039