Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal8g2457 ATGTACAATACATGCAATTATGAACTCACCCTTAACTCAAACGAAGATGTAGAGTGTGCTGTGTGTCTGTGCAAAATAGAAGAAGGAGATGAAATTAGTGTATTGAGATGTGACCATATGTTTCACAAGCATTGTTTAGATAAATGGATTGGTTTCAAGAACAACACTTGCCCTCTTTGTAGAAAATCATTGAGACCAAAAAGTGTCATCACTGAGCTTGGAGCTGAAGTTCTTTCATTTGATTTTTTTGCCATTCGTAGTGATCGAGATCACGATGATTGGTGGCTACGTTGA 294 0.3741 MYNTCNYELTLNSNEDVECAVCLCKIEEGDEISVLRCDHMFHKHCLDKWIGFKNNTCPLCRKSLRPKSVITELGAEVLSFDFFAIRSDRDHDDWWLR* 98
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal8g2457 97 Pfam Ring finger domain 18 61 IPR001841 -
Mal8g2457 97 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 2 69 IPR013083 -
Mal8g2457 97 ProSiteProfiles Zinc finger RING-type profile. 19 61 IPR001841 -
Mal8g2457 97 SMART ring_2 19 60 IPR001841 -
Mal8g2457 97 PANTHER ZINC FINGER, RING/FYVE/PHD-TYPE-RELATED 7 88 - -
Mal8g2457 97 PANTHER RING ZINC FINGER PROTEIN-RELATED 7 88 - -
Mal8g2457 97 SUPERFAMILY RING/U-box 12 67 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal8g2457 Mal-Chr8 54852648 54852941 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal8g2457 14 64 C3H Transcription Factor Family AT2G04240 54.902 3.76e-14 62.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal8g2457 K16282 - mtr:MTR_3g463010 169.474