Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal8g2446 ATGGATAGAGCATTTGATTCATTGTCTGATGTTGTTCCTGGAAGGGATACATGGAGGATAAAGGGTTCTAAGATTCATGCTACCATCCGGAAACAACTTATGTACTTATTCCAGAAGAAATTAATTGAAGGAGGGGTGTATAAGATGTCTTATTTTGCTGTTGCTCCAGCCTTTGGATCATACCGTACCACGCTTCATCCTTACAAGCTTTTGTTCCAGATGAAAACTAAGGTTCAGTCATGTGTGAGTCAGCTCATTCCAATGTATGGAGCAAGCTTTACTGATATTGCCCATGTGTGCAGCCACACTGTTGGTTATGAATACTTAGTTGATGTTATAGGGATGATCACTGGGATATCTGAGGAGAGGGAATATATTAGGGATTCTGCAATCACCAAGATGGTTATCATTGAAATAACTGATCAAAGTGGGAAGGTTGAATGTGCACTCTTTGGTGAATATGTGGAGGTTCTGAAAAAAATGATGGAGTCATCTTTTGAAGGGCTTCCTGTCATTGTTGTTCAGTTTGCGAAGATTAAGTTTTTCATGGATAAGGTGTCAATTCAGAATGTTAAGAGTACAACTAGAATTTTGCTGAATCCAGATATTCCTCAGGTTGCTGTGTTGAAAAAGGGGATGTCTGAACATGGTGTTGAGTCTGCTTCATCTGTTACTAAGCTGGGTTCACGTTCAAAGCCATCGTTTGATGAAGAATTTCTGCGTATGTTTTCAAAGAAGAGTATTGCACAGCTGAATGACTCAGCTGAGGATGGAAATTTTGTTGTAAGTGCAATTGTGACTGGATTTGTTGAAGGAGAAGAATGGTGA 828 0.3949 MDRAFDSLSDVVPGRDTWRIKGSKIHATIRKQLMYLFQKKLIEGGVYKMSYFAVAPAFGSYRTTLHPYKLLFQMKTKVQSCVSQLIPMYGASFTDIAHVCSHTVGYEYLVDVIGMITGISEEREYIRDSAITKMVIIEITDQSGKVECALFGEYVEVLKKMMESSFEGLPVIVVQFAKIKFFMDKVSIQNVKSTTRILLNPDIPQVAVLKKGMSEHGVESASSVTKLGSRSKPSFDEEFLRMFSKKSIAQLNDSAEDGNFVVSAIVTGFVEGEEW* 276
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal8g2446 275 Gene3D - 86 223 IPR012340 -
Mal8g2446 275 SUPERFAMILY Nucleic acid-binding proteins 6 82 IPR012340 -
Mal8g2446 275 PANTHER ANIMAL RPA1 DOMAIN PROTEIN 28 270 - -
Mal8g2446 275 Gene3D - 15 83 IPR012340 -
Mal8g2446 275 Pfam Domain of unknown function DUF223 21 108 IPR003871 -
Mal8g2446 275 SUPERFAMILY Nucleic acid-binding proteins 92 214 IPR012340 -
Mal8g2446 275 CDD RPA1_DBD_A_like 21 78 - -
Mal8g2446 275 CDD RPA1_DBD_B_like 111 211 - -
Mal8g2446 275 PANTHER REPLICATION FACTOR A 1, RFA1 28 270 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal8g2446 Mal-Chr8 54399888 54403335 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal8g2446 22 222 Core DNA Replication Machinery Family AT2G06510 26.316 6.56e-13 66.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal8g2446 - - mtr:MTR_8g062030 340.887