Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal8g2386 ATGTACACCTTTTTTGATGATGATTTTGATAATGTACAAGGCATATTCGGGAAACCAATGCACAGAAGGTTCGCCTACGATGTAAATGGTCGAATCATATTGGAGGGATGGGGAGTAAGTGCTGGTAAAGCTATTTTGCAAGGCACGTTCGTGTGCGAGTACATTGGAGAGGTATTAGAAGACCAGGAGGCACACAACAAATGCGGAAGACATGGCAAAGAAAATTGCAGTATTTTCTTTAACATTGACGCTCGTGTTAACCATATCAGTAGATTGGTTGAAGGACATGCCCGATATGTCATTGATTCTACTAGATATGGAAATGTGTCTAGGTTCATCAATAACAGTTCTTGTAGAGGGCAAGGATTGTAA 372 0.4059 MYTFFDDDFDNVQGIFGKPMHRRFAYDVNGRIILEGWGVSAGKAILQGTFVCEYIGEVLEDQEAHNKCGRHGKENCSIFFNIDARVNHISRLVEGHARYVIDSTRYGNVSRFINNSSCRGQGL* 124
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal8g2386 123 SUPERFAMILY SET domain 18 116 IPR046341 -
Mal8g2386 123 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SUVR5 4 35 - -
Mal8g2386 123 Pfam SET domain 36 118 IPR001214 GO:0005515
Mal8g2386 123 Gene3D SET domain 18 120 IPR046341 -
Mal8g2386 123 PANTHER SET DOMAIN PROTEIN 36 117 - -
Mal8g2386 123 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SUVR5 36 117 - -
Mal8g2386 123 PANTHER SET DOMAIN PROTEIN 4 35 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal8g2386 Mal-Chr8 52396933 52398153 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal8g2386 4 116 C2H2 Transcription Factor Family AT2G23740 39.474 1.42e-30 112
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Mal8g2386 SET 1.1e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal8g2386 - - mtr:MTR_4g132610 155.606