Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal8g2385 ATGGTAATGCTTCCTGAAGGAAAGCGGAAACTAGCTATTCAAATACATGCAGAACCTGGTACTAAAGATCGACAATGCCAAGCGTTTATAGAAGCCAAGGGAAGGCAGTGTTGGAAAGTGGAAATTGGTACCAATATATACTGTTGTGTTCATCTCTCTAGTAGAAAAGAAAAAATTGTTAAAGTTCTTACTCCAATTTGTGGAGGTACTACAATTGCTGGTACAAGATGCAAGCATCATTCCTGTCCCGGATTTTCTTTTTGTAAGAAACATTGGCACAGTGCTGAGACGGGCCAGACCTCAAATTCAAACCACCATACATTCAAGAGGAAAGCTGAAGAAAGTTGCAGTGGTTCCATCCGGAAAAACTTGGTGTTGGTACATCCGGAAAGTCCATTGGAGATCGATCCAGTGTCAATCATCACTGATAATGATTCTTTCTTTGCAAAGAACATCTTAGGCGAACCACTCATGCTTTCCGGTAATGAAAAGTGGAAAGGCTCTCCTAACTATGGTAATGATCATAATAAAGACTTTTGTATTAATGATGAGAATGCTATTAATTGTAAGGAAGCACAGTTTTTATTCAGAAGTTATACTTGTGCAATTTGTTTTGATTCCTTCACTAACAATAAGTTGTTCGAATCACATGTTCAGAAGAGACATTGTGTGCAAGATGTTGAACACTGCTTGCTTTTTCTATGTATTCCTTGTGGTAGTTATTTTGGAAATAAGGAGGAATTATGGTTGCATGTTAAGTCAGTTCACCCTGCTGAATTTAAGCTTTCGAAAGCTCCTGCACAACTAACATTGTCTACCAGTGATGATTCTCCAAAAATGATTGAGCAGGGAAATGAAGCTTCTTTGGACAATGATAATTCCGAGAATTCAGGTGATTCACGGAAGTTAAGCTGCAGTTTTTGTGGTTTGAAATTTGATTCACTACCTAATCTCGGTCTCCATCACCAAGCTTCTTATATGGAGAGTGGTGTTCGTTATAATGCTTACAGACTAAAATTCGGCAGACTTAGCCCTAATTTCAAGAAAAGAAAACAGGCGAAGAAGATACTTGAGATGGGAGAAACATTCATCCAGCCTCATGTAAATGAGATAACAAGTATTGTTGAATTGGAAGAATCTCAATGCTTAGAGGTTGCAAATATTTGA 1167 0.3805 MVMLPEGKRKLAIQIHAEPGTKDRQCQAFIEAKGRQCWKVEIGTNIYCCVHLSSRKEKIVKVLTPICGGTTIAGTRCKHHSCPGFSFCKKHWHSAETGQTSNSNHHTFKRKAEESCSGSIRKNLVLVHPESPLEIDPVSIITDNDSFFAKNILGEPLMLSGNEKWKGSPNYGNDHNKDFCINDENAINCKEAQFLFRSYTCAICFDSFTNNKLFESHVQKRHCVQDVEHCLLFLCIPCGSYFGNKEELWLHVKSVHPAEFKLSKAPAQLTLSTSDDSPKMIEQGNEASLDNDNSENSGDSRKLSCSFCGLKFDSLPNLGLHHQASYMESGVRYNAYRLKFGRLSPNFKKRKQAKKILEMGETFIQPHVNEITSIVELEESQCLEVANI* 389
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal8g2385 388 MobiDBLite consensus disorder prediction 271 297 - -
Mal8g2385 388 ProSitePatterns Zinc finger C2H2 type domain signature. 235 256 IPR013087 -
Mal8g2385 388 Gene3D Classic Zinc Finger 195 277 - -
Mal8g2385 388 ProSiteProfiles Zinc finger C2H2 type domain profile. 233 261 IPR013087 -
Mal8g2385 388 PANTHER SET DOMAIN PROTEIN 11 388 - -
Mal8g2385 388 Pfam Zinc finger C2H2-type, 3 repeats 201 327 IPR040689 -
Mal8g2385 388 SMART c2h2final6 233 256 IPR013087 -
Mal8g2385 388 SMART c2h2final6 199 222 IPR013087 -
Mal8g2385 388 SMART c2h2final6 303 323 IPR013087 -
Mal8g2385 388 ProSitePatterns Zinc finger C2H2 type domain signature. 201 222 IPR013087 -
Mal8g2385 388 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SUVR5 11 388 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal8g2385 Mal-Chr8 52394976 52396227 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal8g2385 193 349 C2H2 Transcription Factor Family AT2G23740 46.154 5.26e-39 147
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Mal8g2385 zf-C2H2_3rep 7.8e-51 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal8g2385 - - mtr:MTR_8g078700 484.182