Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal8g2362 ATGATGAGAATGCAAAACAATAGTCCTTTTACACTCTTGAGGTTCAATCATGGCCTACTTGGCCAAGCATTATGGCTCATTTTGTTTTTTGTTATTACACTCATACAAATCTTAGCACCGGTAACCGGTCAAGCCCTAGGACCGGAAGATCCAACGGAGAACAACAAATCAGTAGCCACCATAATGGGAATTGTAGCCCTTATGTTCCTCTTCTCCTTATTCCTTTCCCTCTACTCGGCGAAATGCACCGATCATCAACAAGGTGTTATTTTTGACCTGACTTTATCTACCGGAGCAAATGGTCTCCGCTCACAAAACAACGAGCCAGATAATGGTCTCAACCAAGAAGTCATCGACACATTTCCAACTTTTCGTTACTCCAACGTGAAGGGACTCAAGATCGGGAAAAGCACGTTGGCTTGTGCCGTTTGCTTGAATGAGTTTCAAGACGAAGAAACATTGCGTTTAATACCTAAATGTAACCATGTGTACCACCATGGTTGCATTGATATTTGGCTTGTATCTCATAATACTTGCCCGGTTTGTCGTGCTAACCTTGCTCCAAGACCCGATGACACCACCGTGCCTCCAATGATATCGAATCAGATACCAGAAAGAGAAGATCATTGTCATGAATTGAGTATAAGAATTTCAAATGAGGAAGAAGTAGAACATGTTGTTGAAGAGGAGCAAAAGAGAGCCAACATCCAAGTGGAAAATTCGCCAAAGGTAGATGTACTTCGTAGGTCTCACACATATGGTGCACCAACACGGTCGAGATCAACAGGATTCTTATCCATTCTCTTGTTATCCCGGTCGAACTCGACAGGTGTGTTGGTGCAACCAGGTGAAGATTGTGAGAGGTTTACATTGAGGTTACCCGATAAAGTTCGAAAGAAGATGATGATGAACATGACGACGCTTAAGCGTGCAAAAAGTTGTGTGAGTTTTACAAGAATGAGCAGTGGCACGTGTGGATATAGGTCAAGAAGTTTTGGGTGTGGAAGTGGGATGGGCCAAGTGCAGTACGAAAGGTTTGGAAGTGATGAAGAAGAGCATTACTTAGGGTTTCTTAGGAATAGTTGGAAAAATAAATCGGTGAGAAAATCTCCTACAAAGTGTTTGGGAGTTGATATGGACAATGATGATGGTGAACGATCCTCTGAACTTTTGTTTCCTGTGTAG 1185 0.4262 MMRMQNNSPFTLLRFNHGLLGQALWLILFFVITLIQILAPVTGQALGPEDPTENNKSVATIMGIVALMFLFSLFLSLYSAKCTDHQQGVIFDLTLSTGANGLRSQNNEPDNGLNQEVIDTFPTFRYSNVKGLKIGKSTLACAVCLNEFQDEETLRLIPKCNHVYHHGCIDIWLVSHNTCPVCRANLAPRPDDTTVPPMISNQIPEREDHCHELSIRISNEEEVEHVVEEEQKRANIQVENSPKVDVLRRSHTYGAPTRSRSTGFLSILLLSRSNSTGVLVQPGEDCERFTLRLPDKVRKKMMMNMTTLKRAKSCVSFTRMSSGTCGYRSRSFGCGSGMGQVQYERFGSDEEEHYLGFLRNSWKNKSVRKSPTKCLGVDMDNDDGERSSELLFPV* 395
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal8g2362 394 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 99 189 IPR013083 -
Mal8g2362 394 CDD RING-H2_EL5_like 141 183 - -
Mal8g2362 394 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 2 334 - -
Mal8g2362 394 ProSiteProfiles Zinc finger RING-type profile. 141 183 IPR001841 -
Mal8g2362 394 Pfam Ring finger domain 140 183 IPR001841 -
Mal8g2362 394 SMART ring_2 141 182 IPR001841 -
Mal8g2362 394 PANTHER RING FINGER DOMAIN-CONTAINING 2 334 - -
Mal8g2362 394 SUPERFAMILY RING/U-box 135 196 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal8g2362 Mal-Chr8 51697893 51699077 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal8g2362 27 367 Rapid Response to Elicitors AT3G05200 33.333 1.58e-46 162
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal8g2362 K10664 - gmx:100814384 335.495