Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal8g2359 ATGCGCATCCACACCAAATTCCCTGCACCCGCACCCGCACCACCTCTCACTCTCTTACTACTGATCTGTAAATTTCATCACCGCCATGCATGGCAACCGTTTCTTCTTCTTCTTTTTCTTTCTTTCATCTTTCCGGCAACAGCTCAGCCACAAACCTCACCACCACCACCGCAAGATCCATTCGCAAAAATTAAGTTCGAAAAAACCATGGCATCAGTCCTTGTGATCCTTGTCATGATTTTCTTCACATTAGGATTTATTTCAATCTACACTCGACAATGTAGAGAGAGAAGAATACGTGGAAGGATTGATCTCACGGTTCCGGTTACCAGAGGTGATGTTTCTCGGCAACAACACGGTCTTGATCAAACGATCATCGATAATTTTCCGAAGTTTATTTACTCGGAGGTGAAAGATCTCAAGATTGGAAGAGTTACGTTAGAATGTGCTGTGTGTTTAAATGAGTTTGCGGATGATGAAACGCTGCGTTTGATTCCTAATTGTAGCCATGTGTTTCATCGTGATTGTGTTGATGTTTGGTTGTTGCATCACTCTACGTGTCCGGTTTGTCGAGCTGATCTTGTTCCTGGTTCGGATGATGTGGGTTCTTCAATCCAGATTCAGATCTCTGAACCGAATTCGGCTGAACCGGTTTTATATCATGAACCGGATGTAATTGAACCTGTTGGTTTGAATGACAAGAAAAAAGTTGTAACAGTGAGTCCAAGTGTAAATTTAGATGGCATGAACCGAACTCCACCAGTTCGGTCCAAGTCATTGGGTTTTGGGTTTGTGAGATTGTTTTCCCGATCTAACTCCACGGGTCATTTGACAGTTCGCTCATATGAGGATTGCGAGCGGTTCACCTTGAGATTGCCTTATGAAGTGCATAATCGTCTTGTGAATGATATCACGTTAAGCCGAACCAAGACTTGGGATGCTACATTGCGGAGTGGGAGAAGGGGTTACCGAACAAGAAGTGCTGGGAGGAGTTTTCTACACTATGAGCGGTTCAATGTGGAGAGCCGGTTGGACCAGAGAGGGTTCACTTGTGCCCCGTCTTTTTTGAGCCGGGTTGGTTCGATGAAATCGACAAAGGATGGTAACAAGACAACAATTGGTGTTATGGGTGAAGTTGATGTTGAAGAACGTTCTTCGAATCATTTAGTTTAA 1173 0.4399 MRIHTKFPAPAPAPPLTLLLLICKFHHRHAWQPFLLLLFLSFIFPATAQPQTSPPPPQDPFAKIKFEKTMASVLVILVMIFFTLGFISIYTRQCRERRIRGRIDLTVPVTRGDVSRQQHGLDQTIIDNFPKFIYSEVKDLKIGRVTLECAVCLNEFADDETLRLIPNCSHVFHRDCVDVWLLHHSTCPVCRADLVPGSDDVGSSIQIQISEPNSAEPVLYHEPDVIEPVGLNDKKKVVTVSPSVNLDGMNRTPPVRSKSLGFGFVRLFSRSNSTGHLTVRSYEDCERFTLRLPYEVHNRLVNDITLSRTKTWDATLRSGRRGYRTRSAGRSFLHYERFNVESRLDQRGFTCAPSFLSRVGSMKSTKDGNKTTIGVMGEVDVEERSSNHLV* 391
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal8g2359 390 CDD RING-H2_PA-TM-RING 148 191 - -
Mal8g2359 390 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 109 196 IPR013083 -
Mal8g2359 390 PANTHER RING FINGER DOMAIN-CONTAINING 35 320 - -
Mal8g2359 390 SMART ring_2 149 190 IPR001841 -
Mal8g2359 390 PANTHER RING-H2 FINGER PROTEIN ATL11 35 320 - -
Mal8g2359 390 ProSiteProfiles Zinc finger RING-type profile. 149 191 IPR001841 -
Mal8g2359 390 SUPERFAMILY RING/U-box 126 197 - -
Mal8g2359 390 Pfam Ring finger domain 148 191 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal8g2359 Mal-Chr8 51673405 51674577 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal8g2359 33 379 Rapid Response to Elicitors AT3G05200 37.892 6.50e-58 192
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal8g2359 K10664 - gmx:100807828 362.073
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal8g2359 8 51673405 51674577 Mal8g2359 8 51673405 51674577 ECH
Mal8g2359 8 51673405 51674577 Mal2g1684 2 20124184 20126357 PCT