Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal8g2257 ATGGGTGGTGCACCTTCTTTCAATCCATTTAGCATTACATTTTTCCCCTTCTTCCCCATCATCGTCGTCACCGTCACCACCACGCTCATTCTAATAGCAAGCGCGGAAGACCACAATTCAAAAGAAAATAGAGCAATTCCTGGTCTCGATGATGACAATGGCGCCACCATATCATCACCACCACCACCACCACCACCGGTATCAACAACTAACAGCTCCAATCTCGAGGAGAGCAAATCAATTGCCTTCAAACCTAGCACGGCGGTGATAGTAGGCGTGTTGACAACCACATTTTCCCTCGTGATGCTACTCCTTCTATACGTTAAACATTGCAACGGTACAAATATGTCCGTTGCTAGCAATGCGAATCCCGATGGGGAATCACGTTTGCATAAGAGGGAAAACTCTGGAATCGAACGAATAATTGTGGAATCATTGCCGGTTTTCAAGTTTGGGTCATTGAGAGGCCCAAAAGATGGACTCGAATGTGCGGTTTGTCTCAATGGATTTGAGGATCCTGAGGTACTTAGGTTATTGCCAAAATGCAAACATGCTTTTCACATGGAATGTGTTGACACGTGGCTTGATGAACATTCCTCGTGCCCACTATGTCGCTATAAGGTGAACCCTGATGACATTAGTCTTCCTCGGCGACAAAACACTGATGAAGAATTGTCGTCATCAAACATCGAACGAGGAAGAGTTGTTAATAATATTAACGACAATGTGTCACAACATGAAAATGAAAATGTAGGTTCACAACAAATGTCTTCAATGGGAGAAAGGGATAGTGGTTTGTTACAAATTAATAGTTCGGCGAATAGTGAAGTGTCGTCATTTACGAAGTCTTTCGATAGTAATAATTCTAGAAATACAAGGAGTGATGGTACCATTGGAGGGCATAGGTTAGATCACAAAATAATTTTGTCCCCTACTTATTCTAATAATTCACATAATGGGGTTCACCAACGGTGGAGCAATTTTGAATCGTGTGATATTCTTTACTTAACCTCTGATAGAATCATTAGTAAGGGTTCCTCTTCAAAGTTGAATAGCACACATGGGAGAAGGAGAACAACGGTGGAGCGTAATCGCGATGCTCTTGATGATGAGATGGAGAATGGTTTTGGTGGTGGTAGGAGGGGTGGAAGGAATATGAGGACCTTATCGGAGATGGCAGGAATGAGTAAGTTTTTGAGTAGGGAGAGAGGGAGGGAAAGAGAACATGGTGGTGGTAGTCGAGAAGAACAAGAGAGACAACGTGAAGGAGTGGCTTCGAGGTGGTTGGCTTGGATTTCAAGGTCAAAATCAAAAGGAGTAACTTATGAATGA 1332 0.4302 MGGAPSFNPFSITFFPFFPIIVVTVTTTLILIASAEDHNSKENRAIPGLDDDNGATISSPPPPPPPVSTTNSSNLEESKSIAFKPSTAVIVGVLTTTFSLVMLLLLYVKHCNGTNMSVASNANPDGESRLHKRENSGIERIIVESLPVFKFGSLRGPKDGLECAVCLNGFEDPEVLRLLPKCKHAFHMECVDTWLDEHSSCPLCRYKVNPDDISLPRRQNTDEELSSSNIERGRVVNNINDNVSQHENENVGSQQMSSMGERDSGLLQINSSANSEVSSFTKSFDSNNSRNTRSDGTIGGHRLDHKIILSPTYSNNSHNGVHQRWSNFESCDILYLTSDRIISKGSSSKLNSTHGRRRTTVERNRDALDDEMENGFGGGRRGGRNMRTLSEMAGMSKFLSRERGREREHGGGSREEQERQREGVASRWLAWISRSKSKGVTYE* 444
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal8g2257 443 MobiDBLite consensus disorder prediction 42 74 - -
Mal8g2257 443 MobiDBLite consensus disorder prediction 279 296 - -
Mal8g2257 443 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 63 437 - -
Mal8g2257 443 MobiDBLite consensus disorder prediction 345 365 - -
Mal8g2257 443 CDD RING-H2_EL5_like 162 205 - -
Mal8g2257 443 MobiDBLite consensus disorder prediction 370 389 - -
Mal8g2257 443 SUPERFAMILY RING/U-box 142 211 - -
Mal8g2257 443 MobiDBLite consensus disorder prediction 395 425 - -
Mal8g2257 443 ProSiteProfiles Zinc finger RING-type profile. 163 205 IPR001841 -
Mal8g2257 443 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 138 213 IPR013083 -
Mal8g2257 443 SMART ring_2 163 204 IPR001841 -
Mal8g2257 443 PANTHER RING-H2 FINGER PROTEIN ATL43 63 437 - -
Mal8g2257 443 Pfam Ring finger domain 162 205 IPR001841 -
Mal8g2257 443 MobiDBLite consensus disorder prediction 279 299 - -
Mal8g2257 443 MobiDBLite consensus disorder prediction 398 423 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal8g2257 Mal-Chr8 48740865 48742196 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal8g2257 82 441 C3H Transcription Factor Family AT5G05810 39.098 6.03e-61 202
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal8g2257 K19041 - mtr:MTR_5g066250 590.497