Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal8g2243 ATGGAACAACCAATCTACGAACACTCTCAACCCTTGAACATCACCGGAACAATCCCCGCCGGTGAAAGTGACGACGGTTCCGGTCCCGACGCCGGTGTCGATGGTCATAACCACATTCAGTACGAAACACACGCTCACGACGATGCCGCCGGCGTTGGTGTCCTTGATGATTCCACCTCCGACGCCGTTTACGGCGGTGGAAACTCTGAATTCGCTCTTCAACGATTTGATGATTCTGATCAGCTTACGCTGTCGTTTCGTGGTCAAGTTTATGTCTTCGATTCTGTTACGCCTGCTAAGGTTCAATCGGTGTTGTTACTCTTGGGTGGATGTGAACAGCCTGAATCTGGTTCCTATGCGGATGCGGCGCCTCAACAAACTCTGAGGGTGGAATCAATGGATTATCCTACAAAATATAGTCAACTACATCGAGAAGCCTCATTACTTAGGTTCCGCCAGAAGAGGAAAGAAAGATGCTTTGATAAGAAAGTTAGATATGAAGTACGTCAAGAAGTTGCACTCAGGATGCAGCGAAAGAAGGGTCAATTTACTACATCTAAGAAACAAGATGGGTCAAATAGTTGTGGTACAGACCAGGATTCTAGTCAGGATGCCAGTCCATCAGAAATCTCTTGCACACATTGTGGCACAAGCTCAAAATCGACCCCAATGATGCGGCGAGGGCCATCTGGTCCAAGGTCACTTTGCAATGCTTGTGGGCTTTTTTGGGCAAATAGGGGTGCCTTGAGAGACCTTTCCAAGAGACACCAGGAATTATCTATTGCACCAGTTGAGCAGGTTGATCAAGGTAACAGCTCAGACTGTGGAACAACAACCATCCCTCCACATAACAATCTCGCTGCTTTCTCGGAGAATAATAACCCAGCTTTGGTAGCTGATCATTGA 906 0.4746 MEQPIYEHSQPLNITGTIPAGESDDGSGPDAGVDGHNHIQYETHAHDDAAGVGVLDDSTSDAVYGGGNSEFALQRFDDSDQLTLSFRGQVYVFDSVTPAKVQSVLLLLGGCEQPESGSYADAAPQQTLRVESMDYPTKYSQLHREASLLRFRQKRKERCFDKKVRYEVRQEVALRMQRKKGQFTTSKKQDGSNSCGTDQDSSQDASPSEISCTHCGTSSKSTPMMRRGPSGPRSLCNACGLFWANRGALRDLSKRHQELSIAPVEQVDQGNSSDCGTTTIPPHNNLAAFSENNNPALVADH* 302
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal8g2243 301 MobiDBLite consensus disorder prediction 186 225 - -
Mal8g2243 301 MobiDBLite consensus disorder prediction 1 37 - -
Mal8g2243 301 MobiDBLite consensus disorder prediction 178 230 - -
Mal8g2243 301 Pfam CCT motif 144 185 IPR010402 GO:0005515
Mal8g2243 301 ProSiteProfiles Tify domain profile. 75 110 IPR010399 -
Mal8g2243 301 CDD ZnF_GATA 211 255 IPR000679 GO:0006355|GO:0043565
Mal8g2243 301 ProSitePatterns GATA-type zinc finger domain. 212 239 IPR000679 GO:0006355|GO:0043565
Mal8g2243 301 ProSiteProfiles GATA-type zinc finger domain profile. 206 264 IPR000679 GO:0006355|GO:0043565
Mal8g2243 301 PANTHER GATA TRANSCRIPTION FACTOR 25 24 278 - -
Mal8g2243 301 Gene3D - 208 259 IPR013088 GO:0006355|GO:0008270
Mal8g2243 301 PANTHER GATA TRANSCRIPTION FACTOR 28 24 278 IPR045280 GO:0006355
Mal8g2243 301 MobiDBLite consensus disorder prediction 1 17 - -
Mal8g2243 301 Pfam tify domain 79 109 IPR010399 -
Mal8g2243 301 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 208 258 - -
Mal8g2243 301 ProSiteProfiles CCT domain profile. 144 186 IPR010402 GO:0005515
Mal8g2243 301 SMART tify_2 75 110 IPR010399 -
Mal8g2243 301 Pfam GATA zinc finger 212 247 IPR000679 GO:0006355|GO:0043565
Mal8g2243 301 SMART GATA_3 206 259 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal8g2243 Mal-Chr8 48546295 48552746 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal8g2243 11 301 Tify Gene Family AT4G24470 44.872 2.61e-78 239
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Mal8g2243 CCT 6.9e-15 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal8g2243 - - pvu:PHAVU_008G182900g 393.66
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal8g2243 8 48546295 48552746 Mal8g2243 8 48546295 48552746 ECH
Mal8g2243 8 48546295 48552746 Mal2g1283 2 15412931 15418018 PCT