Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Mal8g2209 ATGTCCTCACAAACAGTGCAATTGCGTATCAAGAATAATCATGTGGTTATGGACAATGGTATACTACAAGTGTATTTATCCAATCCTGGTGGATTTGTAACTAGAATACAATATAATGGCATTGATAATCTGCTTGAAGCTCTTAACGAAAAGAATAATAGAGGGTATTGGGATGTCGTTTGGAGTGAAGCAGGAAGTACAGGAACAACCGGGACATTCGAGCGGGTTGTGGGAACAAGTTTTAATGTGATAATGGAAACAGAAGAACAAGTTGAAATCTCATTTACAAGAATATGGAATCCATCTCTAAAGGGAAAACAATCACCTCTAAATATAGACAAAAGGTATATTATGCTACGTAATTCCTCAGGATTTTATTCTTATGCTATCTTTGAACACCTAAGGGAGTGGCCAGCTTTCAATATACCTCAAATCAGGATTGTTTATAAGCTTCGTAAAGACAAGTTTCATTACATGGCTGTGGCTGATAATAGACAAAGGTTTATGCCTCTCCCTGATGATAGATTGCCAGGAAGAGGAAAAGAACTTGTTCCTCCAGAAGCTGTTTTGCTTGTAAATCCCATCGAGCCAGAGTTCACAGGAGAGGTTGATGACAAGTACCAATACTCAAGTGAAAACATAGACCTCAAGGTCCATGGATGGATAAGTTCAGAGTCTGAAACAAATCCAGCAACAGGGTTTTGGGTAATCATACCCAGCAATGAGTTTCGATCAGGTGGTCTTGTTAAACAGAATCTCACCTCCCATGTTGGTCCCATCAGCCTTGCAATGTTTCTTAGTGCTCATTACGCAGGAGAGGATATAGTTCTTAAACTCCAACCCAATGAGCCATGGAAGAAAGTTTTTGGTCCAACTTTTGTCTATCTTAATAGCTTGTTGGACCAAGATGACCCCCTAGAGCTTTGGGAGGACGCCAAATTTCAGATGAGCAAGGAAGTACAAAGTTGGCCCTATGATTTTCCAGCTTCAGATGATTTTCAAAAGCCTAACCAACGGGGAAGCGTTTCTGGCACGTTACTAGTTCGTGACAGGTGTCTAAGTGACGAGAATATAATAGCACAAGGTGCATATGTAGGATTGGCACCACCAGGAGATGTTGGATCTTGGCAAAGAGAATGCAAGGGATACCAATTCTGGAGTAGAACAAACGAGGAAGGCTACTTTTCAATCAATAGTATACAGAGTGGTGATTACAATCTCTACGCATGGGTGCCAGGTTTCATTGGAGAATATTGGAACAATGTTGTCCTCAAGATAACTCCAGGTTGTGAAATAAACGTTGGTGACATAGTTTATGAGCCCCCAAGAGATGGTCCAACATTATGGGAGATTGGAATTCCTGATCGTTCTGCTGCAGAGTTCTATGTTCCAGATCCTAATCCAAAATTCATAAACAAACTTTATATAGACCATCCAGACAAGTTTAGGCAATACGGCTTGTGGGAAAGATATGCAGAGTTGTATCCAAATGAAGATTTGATTTATACTGTTGGTGTTAGTGATTACACACAAGATTGGTTCTATGCACAGGTCACCAGGAAGAAAAATGATGGCAGTTACCAAGGAACTACATGGCAAATTAAGTTCAACATGGATGATGTGGAAGCAAATGGAATCTATAAATTACGATTAGCTCTTGCAAGTGCAAATGTCTCTGAACTACAGGTTAGAGTGAATGATGTAAAACAAGATCCTCCACTATTTACTACTGGTGTGATTGGGAAGGACAATGCAATAGCTAGACATGGAATTCATGGCCTCTATTGGCTATTCAACATTGATGTGCCAAGTACTTTGCTATCCAAAGGAGATAATACTATATTTCTAACACAAAATATAGCTACTGGTCCCTTGGCCCTCTTTCAGGGAATAATGTATGATTATATTCGTTTAGAATGCCCCAACCCTTTTTCTTCCCATTAG 1944 0.3987 MSSQTVQLRIKNNHVVMDNGILQVYLSNPGGFVTRIQYNGIDNLLEALNEKNNRGYWDVVWSEAGSTGTTGTFERVVGTSFNVIMETEEQVEISFTRIWNPSLKGKQSPLNIDKRYIMLRNSSGFYSYAIFEHLREWPAFNIPQIRIVYKLRKDKFHYMAVADNRQRFMPLPDDRLPGRGKELVPPEAVLLVNPIEPEFTGEVDDKYQYSSENIDLKVHGWISSESETNPATGFWVIIPSNEFRSGGLVKQNLTSHVGPISLAMFLSAHYAGEDIVLKLQPNEPWKKVFGPTFVYLNSLLDQDDPLELWEDAKFQMSKEVQSWPYDFPASDDFQKPNQRGSVSGTLLVRDRCLSDENIIAQGAYVGLAPPGDVGSWQRECKGYQFWSRTNEEGYFSINSIQSGDYNLYAWVPGFIGEYWNNVVLKITPGCEINVGDIVYEPPRDGPTLWEIGIPDRSAAEFYVPDPNPKFINKLYIDHPDKFRQYGLWERYAELYPNEDLIYTVGVSDYTQDWFYAQVTRKKNDGSYQGTTWQIKFNMDDVEANGIYKLRLALASANVSELQVRVNDVKQDPPLFTTGVIGKDNAIARHGIHGLYWLFNIDVPSTLLSKGDNTIFLTQNIATGPLALFQGIMYDYIRLECPNPFSSH* 648
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Mal8g2209 647 SUPERFAMILY Galactose-binding domain-like 444 639 IPR008979 -
Mal8g2209 647 CDD RGL4_C 449 639 - -
Mal8g2209 647 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 1 645 - -
Mal8g2209 647 Pfam Polysaccharide lyase family 4, domain II 361 433 IPR029413 -
Mal8g2209 647 SUPERFAMILY Starch-binding domain-like 337 424 IPR013784 GO:0030246
Mal8g2209 647 Gene3D - 335 429 - -
Mal8g2209 647 Gene3D - 6 278 IPR014718 GO:0030246
Mal8g2209 647 Pfam Rhamnogalacturonate lyase family 3 203 IPR010325 -
Mal8g2209 647 CDD RGL4_N 12 298 - -
Mal8g2209 647 Gene3D - 445 639 - -
Mal8g2209 647 PANTHER LG27/30-LIKE GENE 1 645 - -
Mal8g2209 647 CDD RGL4_M 338 437 IPR029413 -
Mal8g2209 647 Coils Coil 551 571 - -
Mal8g2209 647 Pfam Polysaccharide lyase family 4, domain III 447 638 IPR029411 -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Mal8g2209 Mal-Chr8 47230151 47235753 Dispersed/Transposed
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal8g2209 1 642 Polysaccharide Lyase AT1G09890 64.697 0.0 864
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal8g2209 K18195 - gmx:100815677 1187.17
       

Event-related genes


Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal8g2209 8 47230151 47235753 Mal8g2209 8 47230151 47235753 ECH