Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal8g2204 ATGGGGAGAGGAAAGATCCAGATAAGGAGGATTGATAATTCGACGAGCAGGCAAGTTACGTTTTCGAAACGAAGGAATGGTTTGTTGAAGAAGGCGAAGGAACTTGCGATTTTGTGTGATGCTGAGGTTGGAGTTATGATCTTCTCCAGCACTGCAAAACTCTATGATTTCGCCAGTACCAGCATGAGATCAGTAATTGATCGATACAACAAATCAAAAGAAGAACATAATGAACTTGGGAGTTCAACCTCTGAAATTAAGTTTTGGCAGAGGGAGGCAGCAATGTTAAGGCAACAATTGCATAATTTGCAAGAAAGTCACCGGCAAATAATGGGTGAAGAATTATCAGGTTTGACAGTCAAAGAATTACAGAGTTTGGAGAACCAATTGGAAGTTAGCCTCCGTGGTGTTCGTATGAAAAAGGAGCAACTTTTTATCGATGAAATACAAGAACTAAATCGAAAGGGAGATATAATACACCAAGAAAATGTGGAACTATATCAGAAGGTAAACCTAATTTGTCAAGAAAATACGAAATTGAAAAAGAAGGTCTATGGAACAAAAGATAAGAATGGAACAAACAGAAATTCTGTTCTCACAGATGGTTTAGGCATAGAAGACGAATCACATGTGCCTGTGAATCTCCAGCTCAGCCAGCCACAGCAACAACACTACAAAACGACTTCAGGAACTACAAAACTGGGACTTCAACTGCATTGA 720 0.3931 MGRGKIQIRRIDNSTSRQVTFSKRRNGLLKKAKELAILCDAEVGVMIFSSTAKLYDFASTSMRSVIDRYNKSKEEHNELGSSTSEIKFWQREAAMLRQQLHNLQESHRQIMGEELSGLTVKELQSLENQLEVSLRGVRMKKEQLFIDEIQELNRKGDIIHQENVELYQKVNLICQENTKLKKKVYGTKDKNGTNRNSVLTDGLGIEDESHVPVNLQLSQPQQQHYKTTSGTTKLGLQLH* 240
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal8g2204 239 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Mal8g2204 239 MobiDBLite consensus disorder prediction 218 239 - -
Mal8g2204 239 CDD MADS_MEF2_like 2 76 IPR033896 GO:0000977|GO:0045944
Mal8g2204 239 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Mal8g2204 239 Pfam K-box region 83 170 IPR002487 GO:0003700|GO:0005634|GO:0006355
Mal8g2204 239 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 239 - -
Mal8g2204 239 ProSiteProfiles K-box domain profile. 86 176 IPR002487 GO:0003700|GO:0005634|GO:0006355
Mal8g2204 239 PANTHER MADS-BOX TRANSCRIPTION FACTOR 23 ISOFORM X1 1 239 - -
Mal8g2204 239 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Mal8g2204 239 SUPERFAMILY SRF-like 2 85 IPR036879 GO:0003677|GO:0046983
Mal8g2204 239 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Mal8g2204 239 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Mal8g2204 239 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Mal8g2204 239 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Mal8g2204 239 Coils Coil 86 106 - -
Mal8g2204 239 Gene3D - 13 109 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal8g2204 Mal-Chr8 47061665 47087836 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal8g2204 1 231 MADS-box Gene Family AT2G22630 61.472 2.80e-98 284
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Mal8g2204 K-box 7.8e-28 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal8g2204 K09264 - gmx:100812413 403.675
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal8g2204 8 47061665 47087836 Mal8g2204 8 47061665 47087836 ECH