Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal8g2177 ATGGCGAGACCTTTGGAAAAAATCAAGAATCTCAGTGATTCAAAGTCAACATGGAACATTGGTGTTCGTGTCGAAGATTTTTGGACTGTGGCAAATTCTAAGAATCGACAGCATTTGGAGATGGTTTTATGTGACAAAGAGGGTGATACTATTCAAGTCATAATCCCAAATGAATTCAAAGATCAGTTCAAGTCAAGAGTTGCAGAGAATGAAACTTTCATTCTGCAGAATTTTGAAGTGGAGAAGAATGAAATGACTATAAATGTAACTGATCATAAGTTTAGGTTGGTTTTTAATGGTGGAACTATCATTGAAGATGTCAACAAACACAAAATTCCTAAGCCTATGTTCAAATTCAAGGACTTTGCTGATATCAAAGCTGGAAATGTTAGGCCAGATGTGCTAATTGATGTGATTGGAGCTTTTCATGAACTCGGATATACTCAAACTGTTGCTGGGAGTAGGAAAATCCAAATTAGCTTTTGGATGAAAGACCTGAAAGGAAACCTACTTAGCTGCACACTGTGGGAGGACTTTGGTCTGAAGTTTCTTGACTACACAAAGGGAAAAATGGATTTTGGTCCTACTATCATTATGCTTCACAATGCTAAGATAAAGGAGGCAACAGATAAGTACGAACTTGGTGTGTCTAATGCATGGAATGCGACAAAGTTGTTCATTAATGCTAATCTTCCAGAGATCAATGAATTCAAGAAAGGATTATGTGTTGATGAAGCAAGTTCATCACAGAGTACTCAGTTGAGTTTGGGATCTCAAATCATGTCTCAATCTTCTTCTATGACACAATATTCTACTATTGATAAATTCATTGGTGTTGCTGTTGTCTTTCCACTATCTGAGATTATTAAGCTGAGGGAGACTACTACTTGCGTCACTGTTGTTAAGATGAAAAAAGTTAAACCAACAAAAAATGGATGGTACTACAAAGCATGCAGTAAATGTCCAAGAGCTGCAAAAGGCGATACTCTACCACTTTTGTGCTCTGAAAGACATGAAACAAATGCAATTAATCTGAGGTTCAAGTTAGATATGGAAATTGAATTCAATCATATCACTTGTAAGTTTGTCTTTTGGGATAGAGAGTGTAATGAGTTGCTTGGAACTACTGCGGCTGATCTTCAGAGGATCATGACTGAGGATGCTGCTCTCTTGGCAATTGAAGGTCCTAACCTAGCTGAGGATGTTGATGTTTTACCAAATGCATCAGATGAGGTTGATCTATCAAAAACATGTGAGAATGATTGCAAGAGTCTAGCTTCGCTAACTCCAGGGAAGAGAGTTGTTGTTGATGATGTTGAGAAAGATGCAAGCTCCCCAAATATTGCTCCTACACAACTATCCTCCACTAAGTTGAAGAAGCATATCAAAGTTGAAAAGAAAGATTGA 1407 0.3753 MARPLEKIKNLSDSKSTWNIGVRVEDFWTVANSKNRQHLEMVLCDKEGDTIQVIIPNEFKDQFKSRVAENETFILQNFEVEKNEMTINVTDHKFRLVFNGGTIIEDVNKHKIPKPMFKFKDFADIKAGNVRPDVLIDVIGAFHELGYTQTVAGSRKIQISFWMKDLKGNLLSCTLWEDFGLKFLDYTKGKMDFGPTIIMLHNAKIKEATDKYELGVSNAWNATKLFINANLPEINEFKKGLCVDEASSSQSTQLSLGSQIMSQSSSMTQYSTIDKFIGVAVVFPLSEIIKLRETTTCVTVVKMKKVKPTKNGWYYKACSKCPRAAKGDTLPLLCSERHETNAINLRFKLDMEIEFNHITCKFVFWDRECNELLGTTAADLQRIMTEDAALLAIEGPNLAEDVDVLPNASDEVDLSKTCENDCKSLASLTPGKRVVVDDVEKDASSPNIAPTQLSSTKLKKHIKVEKKD* 469
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal8g2177 468 Pfam Domain of unknown function DUF223 40 135 IPR003871 -
Mal8g2177 468 CDD RPA1_DBD_B_like 137 239 - -
Mal8g2177 468 Gene3D - 258 412 IPR012340 -
Mal8g2177 468 SUPERFAMILY Nucleic acid-binding proteins 117 240 IPR012340 -
Mal8g2177 468 CDD RPA1_DBD_A_like 20 104 - -
Mal8g2177 468 PANTHER RPA1 DOMAIN PROTEIN, PUTATIVE-RELATED 41 372 - -
Mal8g2177 468 Gene3D - 3 106 IPR012340 -
Mal8g2177 468 SUPERFAMILY Nucleic acid-binding proteins 285 388 IPR012340 -
Mal8g2177 468 PANTHER REPLICATION FACTOR A 1, RFA1 41 372 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Mal8g2177 468 Gene3D - 111 250 IPR012340 -
Mal8g2177 468 SUPERFAMILY Nucleic acid-binding proteins 5 105 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal8g2177 Mal-Chr8 46450425 46453131 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal8g2177 5 239 Core DNA Replication Machinery Family AT5G45400 22.764 3.47e-08 54.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal8g2177 - - mtr:MTR_5g053590 566.614