Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal8g2156 ATGGGCAGGCGAAAAAGTAAACCACATCGATCAGGTGGGATAATAGTAGAAACAAAGGCTACTGTCGAAACAGAATTGAATAAACATAATGTTGTAGAAGCAGGAGAAGAAGAAAAGAGTGATTTTGGTGATATCTATAAACCATATTTTGTTGAGGTTGACCGGTCTGGTTGGTTGTCCGATGAACACCTTGATATTTCTGAAGTTGTTCTTAGGGATTTAAATTTAAGAGAAGGTTTTGATGGTTTTGAGTTGTCTGAGGATTTTTATCAGGATCCCCAATTCTTGTTAAGATTTCGGTTGTGTAATGTCGGTAATGATTTTGGTCGAATCAAACTTGGCCATTGGCCTGTGTTACCTTATACCGATATTCATCTAGAGTTTGTTAAAAGAGCTACAGTTGACAATACCGAAACATGCACGTTGTTGTTATCTGGTATTTTTGATGGGCCTGATGAAGGTGTTTCTGGTCTTGTTCATTTGGTGAATTTGAAATTTGTTACATTGAGGGCAGTTCTTGGGATTAGGCTTTCTGGGGACATTCCTTCCCTTAGGGTGAGGGTTGAGGTACTAAAGAGTGCCTTCGATGCATGCGAGTCACTTCTTGAGGGTTCTAGAAAACTATGGAGAAAGAGTATGATGAATGTTATGTCTTGGTTACGACCAGAAATAATGACTTCAGAAATTAAGTATGGGTTTAGTACCTATATGGAAATGGAAGTTGATTTCCAGACAGACATGGCAGAGGACGGTGACTATGCAGCAAGATACTCGAGGTTTGATCCTGCTGGTTTTTATGAAGCCATTAAGCCTTCAAAAGCAGAGCCAATGCTTGAAGATGACATACCTGAGCTACTTCCTGAACTGAGGCCATATCAACGGCGTGCAGCTTTCTGGATGGTAAAACGAGAAAAAGAAATGGTAGAAAGTCAGCGTGAAAGTGAAAGAAATCAGTTTCATGCTCCATTATGTGTGCCGGTGGATTTTCTGGACACAAGGTCTAAAATGTTTTTCAATCCATTCAGTGGAAATATTTCCTTGTGCCCGGAGACTTCTTCACCTTATGTATTTGGAGGCATTCTTGCTGATGAGATGGGATTGGGAAAAACTGTAGAATTGCTTGCTTGCATCTTTGCTCACCGGAGATCAGCATATGGAAGTGACATACTAATTGATTCAGTACCTCAAGTCAATGGCGATGAAAAAGTCACTTTAAAAAGACTCAAAAGAGAGCGTGTGGAGTGCATATGTGGAGCTGTGAGCGACAATCTCAAATATGAAGGACTATGGGTTGAGTGTGACATTTGTGATGCTTGGCAACATGCAGATTGTGTTGGTTATTCACCTGAAGGAAAGTCGCTGAAATCAAAACAAGGATTGGAAAGCAAGACATATAACACTACCATAGAATTGAGGAATGGGGAATATGTATGTCAGATGTGCTCTGAACTGATTCGAGCTACTGAATCTCCTATTGCCTCTGGTGCTACACTCATTGTCTGCCCAGCTCCTATTTTGCCCCAATGGCATGATGAAATTATACGTCATACACATCCAGGAGCCTTGAAAACTTGTATTTATGAAGGTGTGCGTGACACATCTTTCTCCAATTCATCTCCGATGGATATCAGTGATCTTGCCAGTGCGGACATTGTATTAACTACATATGATGTGCTTAAAGATGATTTGTTCCATGATTCTGATAGACATATAGGCGATCGACACCTTTTGAGACTTCAGAAAAGGTACCCAGTTATCCCAACTCTTCTTACCAGAATATACTGGTGGAGGATTTGCTTGGATGAGGCTCAAATGGTGGAGAGGACTGTTGCTACCGCTGCTACTGAAATGGCTCTAAGACTCCATTCCAAGCATCGTTGGTGCATTACAGGGACTCCAATTCAGCGAAAGTTTGATGACCTATATGGACTTTTAAGATTTGTTAAAATTAGTCCTTTTAATATCTACAGATGGTGGAGTGAAGTTATTCGAGATCCATATGAGAAGGGAGATATGGGAGCTATAGAATTTACACACAGAATTTTCAAACAAATCATGTGGCGTTCTTCTAAACAACATGTTGCAGATGAATTGGACCTTCCCTCCCAAGAGGAGTGCCTCTCTTGGCTTACACTATCACCAGTAGAAGAGCACTTTTACCAGAGGCAACATGAAGCTTGTGTTAGAGATTCCCATGATGTTATTGAAAGTTTGAGAGAAGATATTCTTAATAGAAAAGTCCCAGATTCTGTCTCTTCAAGTGGTTCCTCCGATACTTTAATCACTCACGCAGAGGCAGGGAAGCTATTGAATGCTTTGCTAAAGCTTCGTCAAGCTTGTTGTCACCCCCAGGTTGGAAGTTCTTCTGGATTACGCTCTCTGCAGCAGTCACCTATGACAATGGAGGAAGTACTTATGGTCCTTATAAGCAAGACCAAGATAGAAGGCGAGGAAGCTCTCAGGAAGTTAGTTATTGCTCTGAATGCGCTTGCAGCAGTAGTCACAATACAAAATGATTTTTCTCAAGCTGCTTTGCTGTACAATGAAGCTCTTACTTTAGCTGAAGAGCATTCAGAAGATTTCCGCTTGGATCCTTTGTTAAATATCCACATTCATCACAATCTTGCTGAAATATTCCCCCTGGCTGAAAATTTTGTTTTGAACTTGCCATCCAAAGGAAAACAATTCTCTAGGACTTCTGCAGTAAATACATCCCAAAAGCATTTTATTGTAAAGGATGATCATGGTCAAGTGAAGAGGCAAAAAATCGGTAACTGCGGTGACATAAATTTAACTGGGACTTCTTCAGATCCATCAAATGTTGCATCTAACTGTTCAGAAAGTGGATTAAATGATAGGGAATCTGATGATTTGTCGGCCAGTTCTGTCAAATATCTGAAATCAGAATGTGAAGATTCAAAACAGAAATACTTATCTGTGTTCAGTTCAAAGCTAGCTGCAGCTCAGCAGGAGTTTCAAAGTTCTTACATACAGGTTTGTAACGCATATCAAGGCACCAGTACAAATCAAAATTCATTTTGGTGGTTAGAAGCACTTGACCACGCGGAGAAGAATAAGGATTGCTCAACTGAGCTGATTAGAAAGATTGAAGAAGCCATCTCAGGAAATTCAAACAATTCAAAATCGTCAACAATAGCTGCTCGTTTTCGGAGCATAAGCTCTCTGAAGTATGAAATTCAAACCGGATTGGATCAGTTAGAAGCCTCAAGGAAAGTGGTATTAGATCGTCTATTAGAAATTGATCAGACTATGGAAAACCCAAAAGATGAAGATATTGAGCGCGCTGGTAAATGTCGAAATTGTCTACCTAATTGTGATGGCCCCCCATGCGTTCTGTGTGAACTAGATGAATTGTTTCAGCACTACGAAGCTAGACTCTTTGTTCTCAAGAACGAACGTGGAGATATAATTTCATCTGCTGAGGAGGCAGTAGATTTTCAAAAGAAAAATTTTGCACTAAATCATTTCCACTCAAAGCTATCACAATCTAATCACAATTCATCAGTATCTGTTGATAATGAAGAGTCCAGAAAAAGGAATGTTGGGCAGAAAGTTGTGACTTCAAGATCGGCATCTATCCTGGAGGTTCTTCTTGGAGTTATAAAGAACTATTGCAAGACTCGGTTCGAAAGGGACAGTATCTCAGCAGCAACCAAGAATTTACATATTCTTGAGGGAATGCGAAAGGAGTTTGTCTATGCAAGGTCTTTGGCATTAGCTCAAGCTCAATATCTGCGTGCCCATGATGAAATAAAGATGGCGGTTTCTCGTTTACACCTGAGGGAAAATGAAGATGACAAATCTCTTGATGCTTTAGGTGAAAATGAATTATATGCGGCTAGCTCAAACTTTACCCAGGAGAAGTTTATGTCATTGGCCTTGCTGTCACAGATAAAAGGAAAGCTACGCTACTTAAAGGGTTTGGTTAAGTCTAAGCAAAAACTGCCATTGGAAAGTCCAGATAAGTCTTCATGCACTCAAGATACGAATGCCATATCAAACTCTACGGAAGAGAAGGGTGAACTCATATCTAAAACTTATGAGGAAACATGCCCAATTTGTCAAGAAAAGCTAGGCCATCAGAGAATGGTGTTTCAATGTGGGCATGTTACTTGCTGTAAATGTTTATTTGCTATGACTGAGAAAAAACTTAAATATAACAAGACCATTAAGTGGGTGATGTGCCCTACATGTCGTCAGCATACTGATTTTGGAAACATTGCCTATGCTGTTGATGGACAAAAGGAATCTCCCAATTCATCAATGCTGCATACAATTGAGAACTGTGAAAAACACGAAGCATCCATTACTGTTGAAGGCTCATATGGAACCAAGCATACTGATATTGGAAACATTGCCTATGCTGTTGATGGACAAAAGGAATCTCCCAATTCGTCAATGCTGCATACAATTGACAACTGTGAAAAACACGAAGCATCCATTACTGTTGAAGGCTCATATGGAACCAAGATTGAAGCAGTCACAAGAAGAATCTTGTGGATAAAGGCTACAAATCATAAATCAAAAGTTCTTGTATTTTCAAGTTGGAATGATGTACTTGATGTATTGGAACATGCCTTTGCCGCCAATAACATCACCTTCGTCCGGATGAAGGGAGGCAGGAAAGCACACACTGCCATCAGTCAATTTAGAGGATTACAGAATGGTACAAAAGAATGTGAGGGGTCAGAACCAAAATCTATTCAGGTGTTATTGCTTTTAATCCAACATGGAGCCAATGGCCTCAACCTTTTGGAAGCACAACATGTGGTGCTTGTAGAGCCATTACTCAATCCTGCTGCTGAAGCACAAGCAATCAGCCGTGTACACCGGATTGGCCAAAAACATAAGACCCTCATTCATCGTTTCTTAGTAAAGGACACAGTTGAAGAGAGCATATATAAATTGAACAGAAGCAGAAGCAATAATATATTTATTAGTGGCAACAAAAAAAATCAAGATCAACCTGTTTTGACCCTTAAGGATGTGGAATCCTTGTTGGCAAGAGCACCATTAACTGCGCCGGAAATCGATGAAAATCCTAATACAAATACATTAACTGCGCTGGAAATCGAAGAAAATCCTGATACAAATACAAACCTGAGAGACCTGCCACCATCACTTGCGGCGGCAATAGCTGCTGAGAGAAGACATAATCAGCAAAGAACATGA 5193 0.4015 MGRRKSKPHRSGGIIVETKATVETELNKHNVVEAGEEEKSDFGDIYKPYFVEVDRSGWLSDEHLDISEVVLRDLNLREGFDGFELSEDFYQDPQFLLRFRLCNVGNDFGRIKLGHWPVLPYTDIHLEFVKRATVDNTETCTLLLSGIFDGPDEGVSGLVHLVNLKFVTLRAVLGIRLSGDIPSLRVRVEVLKSAFDACESLLEGSRKLWRKSMMNVMSWLRPEIMTSEIKYGFSTYMEMEVDFQTDMAEDGDYAARYSRFDPAGFYEAIKPSKAEPMLEDDIPELLPELRPYQRRAAFWMVKREKEMVESQRESERNQFHAPLCVPVDFLDTRSKMFFNPFSGNISLCPETSSPYVFGGILADEMGLGKTVELLACIFAHRRSAYGSDILIDSVPQVNGDEKVTLKRLKRERVECICGAVSDNLKYEGLWVECDICDAWQHADCVGYSPEGKSLKSKQGLESKTYNTTIELRNGEYVCQMCSELIRATESPIASGATLIVCPAPILPQWHDEIIRHTHPGALKTCIYEGVRDTSFSNSSPMDISDLASADIVLTTYDVLKDDLFHDSDRHIGDRHLLRLQKRYPVIPTLLTRIYWWRICLDEAQMVERTVATAATEMALRLHSKHRWCITGTPIQRKFDDLYGLLRFVKISPFNIYRWWSEVIRDPYEKGDMGAIEFTHRIFKQIMWRSSKQHVADELDLPSQEECLSWLTLSPVEEHFYQRQHEACVRDSHDVIESLREDILNRKVPDSVSSSGSSDTLITHAEAGKLLNALLKLRQACCHPQVGSSSGLRSLQQSPMTMEEVLMVLISKTKIEGEEALRKLVIALNALAAVVTIQNDFSQAALLYNEALTLAEEHSEDFRLDPLLNIHIHHNLAEIFPLAENFVLNLPSKGKQFSRTSAVNTSQKHFIVKDDHGQVKRQKIGNCGDINLTGTSSDPSNVASNCSESGLNDRESDDLSASSVKYLKSECEDSKQKYLSVFSSKLAAAQQEFQSSYIQVCNAYQGTSTNQNSFWWLEALDHAEKNKDCSTELIRKIEEAISGNSNNSKSSTIAARFRSISSLKYEIQTGLDQLEASRKVVLDRLLEIDQTMENPKDEDIERAGKCRNCLPNCDGPPCVLCELDELFQHYEARLFVLKNERGDIISSAEEAVDFQKKNFALNHFHSKLSQSNHNSSVSVDNEESRKRNVGQKVVTSRSASILEVLLGVIKNYCKTRFERDSISAATKNLHILEGMRKEFVYARSLALAQAQYLRAHDEIKMAVSRLHLRENEDDKSLDALGENELYAASSNFTQEKFMSLALLSQIKGKLRYLKGLVKSKQKLPLESPDKSSCTQDTNAISNSTEEKGELISKTYEETCPICQEKLGHQRMVFQCGHVTCCKCLFAMTEKKLKYNKTIKWVMCPTCRQHTDFGNIAYAVDGQKESPNSSMLHTIENCEKHEASITVEGSYGTKHTDIGNIAYAVDGQKESPNSSMLHTIDNCEKHEASITVEGSYGTKIEAVTRRILWIKATNHKSKVLVFSSWNDVLDVLEHAFAANNITFVRMKGGRKAHTAISQFRGLQNGTKECEGSEPKSIQVLLLLIQHGANGLNLLEAQHVVLVEPLLNPAAEAQAISRVHRIGQKHKTLIHRFLVKDTVEESIYKLNRSRSNNIFISGNKKNQDQPVLTLKDVESLLARAPLTAPEIDENPNTNTLTALEIEENPDTNTNLRDLPPSLAAAIAAERRHNQQRT* 1731
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal8g2156 1730 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1500 1671 IPR001650 -
Mal8g2156 1730 SUPERFAMILY FYVE/PHD zinc finger 411 483 IPR011011 -
Mal8g2156 1730 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 465 651 IPR014001 -
Mal8g2156 1730 Coils Coil 1019 1039 - -
Mal8g2156 1730 Gene3D - 352 397 IPR038718 -
Mal8g2156 1730 Gene3D - 482 710 IPR038718 -
Mal8g2156 1730 ProSitePatterns Zinc finger PHD-type signature. 415 481 IPR019786 -
Mal8g2156 1730 SMART helicmild6 1528 1620 IPR001650 -
Mal8g2156 1730 MobiDBLite consensus disorder prediction 937 956 - -
Mal8g2156 1730 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 264 688 IPR027417 -
Mal8g2156 1730 SMART ring_2 1358 1405 IPR001841 -
Mal8g2156 1730 CDD DEXQc_SHPRH 289 689 - -
Mal8g2156 1730 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1342 1424 IPR013083 -
Mal8g2156 1730 MobiDBLite consensus disorder prediction 1169 1189 - -
Mal8g2156 1730 SMART ultradead3 285 658 IPR014001 -
Mal8g2156 1730 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 594 1672 IPR027417 -
Mal8g2156 1730 SUPERFAMILY RING/U-box 1353 1410 - -
Mal8g2156 1730 Gene3D - 1450 1708 IPR027417 -
Mal8g2156 1730 Pfam PHD-finger 415 483 IPR019787 -
Mal8g2156 1730 ProSiteProfiles Zinc finger RING-type profile. 1358 1406 IPR001841 -
Mal8g2156 1730 Pfam SNF2-related domain 292 785 IPR000330 GO:0005524|GO:0140658
Mal8g2156 1730 SMART PHD_3 414 482 IPR001965 -
Mal8g2156 1730 Pfam Helicase conserved C-terminal domain 1499 1620 IPR001650 -
Mal8g2156 1730 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 400 481 IPR013083 -
Mal8g2156 1730 CDD PHD_TCF19_like 427 481 - -
Mal8g2156 1730 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SHPRH FAMILY MEMBER 1453 1690 - -
Mal8g2156 1730 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SHPRH FAMILY MEMBER 1 1452 - -
Mal8g2156 1730 CDD SF2_C_SNF 1494 1631 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal8g2156 Mal-Chr8 45310551 45326569 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal8g2156 285 790 RAD5 or RAD16-like Gene Family AT5G22750 27.432 1.63e-39 159
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Mal8g2156 SNF2_N 2.1e-84 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal8g2156 K15710 - gmx:100776659 2636.68
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal8g2156 8 45310551 45326569 Mal8g2156 8 45310551 45326569 ECH