Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal8g2148 ATGATGTCTCCAGGTCGAACCGAAGGAGCTAACTCTTCAAGCAACTCCCAAAGTAGGGTTAACGGAACTATTTTCCCCGAGAAATTACAAGAAATCATACAACAAGTGGAACCTTCAATTATAGAGAATGGGACTGGTTTAGTTGCAATTGCTGAGATTCAAGTTGGTCAAAATGTTGAACAACAACCAATTTATGTTCCTGATCCTGAAGTGAGAGAAACGATGGAGGAAAGGGTCCTGATTGCTTGGGAACGTGAACACTCTGGTCAACGTTTAAGGATGCAGGATACGGTGGCAATGGACTACTACAATGTTGTGTTACGCCATCTTCCACAACCAATTAATAGTCCAAACCAACCTGTGCTACCCCTCCATCTTCAGCAATCAAATTATGATGCTCAAAATGAGCCGCGGTGGCTTCAATACCTAACCAACCGGTGGATAGGAAGAGTAGAAGCAATGCTGACAAATATTGTTGTTGAAAGATTTAAGCTCGTGGATGACAGTCCAGAAAATGAAGAATCATGTCGCATTTGTCTGGAAGATTTTGTCACCGGAGAAGAAATTCGAAGATTGGACTGTGGACATAGGTTTCACATAACCTGCACTCAAGAGTGGTTCCTAATAAAGAATGCATGTCCACTTTGCAATAGAAGGGGAGTGCATTTGATTGGTGACCGCAGGAAGTAG 690 0.4261 MMSPGRTEGANSSSNSQSRVNGTIFPEKLQEIIQQVEPSIIENGTGLVAIAEIQVGQNVEQQPIYVPDPEVRETMEERVLIAWEREHSGQRLRMQDTVAMDYYNVVLRHLPQPINSPNQPVLPLHLQQSNYDAQNEPRWLQYLTNRWIGRVEAMLTNIVVERFKLVDDSPENEESCRICLEDFVTGEEIRRLDCGHRFHITCTQEWFLIKNACPLCNRRGVHLIGDRRK* 230
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal8g2148 229 ProSiteProfiles Zinc finger RING-type profile. 176 217 IPR001841 -
Mal8g2148 229 SMART ring_2 176 216 IPR001841 -
Mal8g2148 229 Pfam Ring finger domain 175 217 IPR001841 -
Mal8g2148 229 MobiDBLite consensus disorder prediction 1 20 - -
Mal8g2148 229 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 147 220 IPR013083 -
Mal8g2148 229 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 11 217 IPR045191 GO:0061630
Mal8g2148 229 SUPERFAMILY RING/U-box 167 219 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal8g2148 Mal-Chr8 44922938 44926511 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal8g2148 148 216 C3H Transcription Factor Family AT2G15530 37.975 5.02e-12 63.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal8g2148 - K17821 mtr:MTR_5g068000 259.996