Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal8g2145 ATGAACACGGAAGGAGCTAACTCTTCAAGCAACTCCCAAAGTAGGGTCAACAGAACTATTTTCCCAGAGAAATTACAAGAAAACATACAACAAGTGGAACCTTCAATAATAGAGAATGAGAATGGTTTAGTTGCAATTGCTGAGATTCAAGTTGGTCAGAATGTTGAACAAGTAACAGTTAGTGGAAATGTTGAACAACAAGCAATTTATGTTCCTGATCTTGAAGTGAGAGAAATGATGGAGGATAGGGTCCTGGTTGCTTGGGAACGTGAACGCTCTGGTCAAAGTTTAAGGATGCAGGATAAGGTGGCAATGGACTACTACAATGTTGTGTTACGCCATCTTCCACAACCAATTAATAGTCCAAACCAACCTGTGCTACCCCTCCATCTTCAGCAATCAAATTATGATGCTCAAAACGAGCCGCAGTGGCTGCAATACCTAACCAACCGGTGGATAAGAAGAGTAGAAGCAATGATGACAAATGTTGTTGAAAGATTTGAGCTCGCGGATGACAGTCCCGAAAATGAAGAATCATGTCGCATTTGTCTGGAAGATTTCGTCACTGGAGAAGAAATTCGAAGATTGGACTGTGGACATAGGTTTCACATAACCTGCACTCAAGAGTGGTTCCTAATAAAGAATGCATGTCCACTTTGCAATAGAAGGGGAGTGCATTTGATTGGTGACCGCAGGAAGTAG 702 0.4188 MNTEGANSSSNSQSRVNRTIFPEKLQENIQQVEPSIIENENGLVAIAEIQVGQNVEQVTVSGNVEQQAIYVPDLEVREMMEDRVLVAWERERSGQSLRMQDKVAMDYYNVVLRHLPQPINSPNQPVLPLHLQQSNYDAQNEPQWLQYLTNRWIRRVEAMMTNVVERFELADDSPENEESCRICLEDFVTGEEIRRLDCGHRFHITCTQEWFLIKNACPLCNRRGVHLIGDRRK* 234
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal8g2145 233 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 144 224 IPR013083 -
Mal8g2145 233 SUPERFAMILY RING/U-box 169 223 - -
Mal8g2145 233 Pfam Ring finger domain 179 221 IPR001841 -
Mal8g2145 233 SMART ring_2 180 220 IPR001841 -
Mal8g2145 233 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 172 221 IPR045191 GO:0061630
Mal8g2145 233 ProSiteProfiles Zinc finger RING-type profile. 180 221 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal8g2145 Mal-Chr8 44887814 44891449 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal8g2145 175 220 C3H Transcription Factor Family AT2G15530 47.826 1.41e-11 61.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal8g2145 - K17821 mtr:MTR_5g068000 258.84