Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal8g2142 ATGATGTCTCCAGGTCGAACCGAAGGAGCTAACTCTTCAAGCAACTCCCAAAGTAGGATTAACGGAACTATTTTCCCAGAGAAATTACAAGAAAGCATACAACAAGTGGAACCTTCAATTATAGAGAATGAGACTGGTTTAGTTGCAATTGTTGAGATTCAAGTTGGCCAGAATGTTGAACAACAACCAATTTATGTTCTTGATCCTGAAGTGAGAGAAACGATGGAGGAAAGGGTCCTGTTTGCTTGGGAACGTGAACACTCTGGTCAACGTTTAAGGATGCAGGATAAGGTGGCAATGGACTACTACAATGTTGTGTTACGCCATCTTCCACAACTTATTAATAGTCCAAACCAACCTGTGCTACCCCTCCATCTTCAGCAATCAAATTATGATGCTCAAAACGAGCCGCGGTGGCTTCAATACCTAACCAACCGGTGGATAGGAAGAGTAAAAGCAATGCTGACAAATATTGTTGTTGAAAGATTTGATCTCGTGGATGACAGTCCCGAAAATGAAGAATCATGTCGCATTTGTCTGGAAAATTTTGTCACCGGAGAAGAAATTCGAAGATTGGACTGTGGACATAGGTTTCACATAACCTGCACTCAAGAGTGGTTCCTAATAAAGAATGCATGTCCACTTTGCAATAGAAGGGGAGTGCATTTGATTGGTGACCGCAGGAAGTAG 690 0.4203 MMSPGRTEGANSSSNSQSRINGTIFPEKLQESIQQVEPSIIENETGLVAIVEIQVGQNVEQQPIYVLDPEVRETMEERVLFAWEREHSGQRLRMQDKVAMDYYNVVLRHLPQLINSPNQPVLPLHLQQSNYDAQNEPRWLQYLTNRWIGRVKAMLTNIVVERFDLVDDSPENEESCRICLENFVTGEEIRRLDCGHRFHITCTQEWFLIKNACPLCNRRGVHLIGDRRK* 230
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal8g2142 229 SMART ring_2 176 216 IPR001841 -
Mal8g2142 229 ProSiteProfiles Zinc finger RING-type profile. 176 217 IPR001841 -
Mal8g2142 229 MobiDBLite consensus disorder prediction 1 20 - -
Mal8g2142 229 SUPERFAMILY RING/U-box 167 219 - -
Mal8g2142 229 PANTHER SI:CH211-59O9.10 63 222 - -
Mal8g2142 229 Pfam Ring finger domain 175 217 IPR001841 -
Mal8g2142 229 PANTHER SI:CH211-59O9.10 63 222 - -
Mal8g2142 229 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 146 220 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal8g2142 Mal-Chr8 44855668 44859162 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal8g2142 171 216 C3H Transcription Factor Family AT2G15530 47.826 3.42e-11 60.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal8g2142 - K22753 mtr:MTR_5g068000 253.832