Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal8g2139 ATGATGTCTCCAGGTCGAACCAAAGGAGCTAACTCATCAAGCAACTCCCAAAGTAGGGTTAACGGAACTATTTTCCCAGAGAAATTACAAGAAAACGTACAACAAGTGGAACCTTCAATTGTAGAGAATGAGACTGGTTTAGTTGCAATTGCTGAGATTCAAGTTGGTCAGAATGTTGAACAACAACCAATTTATGTTCCTGATCCTGAAGTGAGAGAAACGATGGAGGAAAAGGTCCTGATTGCTTGGGAACGTGAACACTCTGGTCAACGTTTAATGATTCAGGATAAGGTGGCAATGGACTACTACAATGTTGTGTTACGCCATCTTCCACAACCAATTAATAGTCCAAACCAACCTGTGCTACCCCTCCATCTTCAGCAATCAAATTATGATGCTCAAAACGAGGAAAATTTTGTCATCGGAGAAGAAATTCGAAGATTGGACTGTGGACATAGGTTTCACATAACCTGCACTCAAGAGTGGTTCCTAATAAAGAATGCATGTCCACTTTGCAATAGAAGGGGAGTGCATTTGATTGGTGACCGCAGGAAGTAG 558 0.4158 MMSPGRTKGANSSSNSQSRVNGTIFPEKLQENVQQVEPSIVENETGLVAIAEIQVGQNVEQQPIYVPDPEVRETMEEKVLIAWEREHSGQRLMIQDKVAMDYYNVVLRHLPQPINSPNQPVLPLHLQQSNYDAQNEENFVIGEEIRRLDCGHRFHITCTQEWFLIKNACPLCNRRGVHLIGDRRK* 186
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal8g2139 185 SUPERFAMILY RING/U-box 136 175 - -
Mal8g2139 185 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 135 178 IPR013083 -
Mal8g2139 185 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 137 173 IPR045191 GO:0061630
Mal8g2139 185 MobiDBLite consensus disorder prediction 1 20 - -
Mal8g2139 185 Pfam Ring finger domain 138 173 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal8g2139 Mal-Chr8 44707398 44711410 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal8g2139 143 177 C3H Transcription Factor Family AT5G67120 51.429 3.50e-09 53.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal8g2139 - K19041 mtr:MTR_5g068000 181.03