Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal8g2116 ATGGAAACTTTGGGTGGTAATTCATCATCATCACCATCATTATCATCAGCATCATCATCATCATCTTTTGGAGGGGTTAATAGTGATGATAACAATGGTAGTGTAACTTGGTATGGGATGAGGTTACCTTCTGTTAACCCCTTTTTGTCGCCGATTTCGTTTTTGTTGGATTATTCTGGAATTTTACGTTCGAATAATGATTCTGAGGGTATGATTATCAACAATGGAGTTTCTGGTTCGGAGTTACGGTCTCAGGTTGATGCTGGTGCTGTTGGTAGTGGTGGGAGTGGTGCAGGGGAAGTTGCAATAAGGATTATTGGAGCTGGAGAGAATATTCATAATCAGGTTGGAGAAGTGGGTTATGATGATTGTGGTGAGGAGCTTGTTGGGGAGAGAAGTGGAACGCCTGCCTTGGATGATGATGATGCCGAGGGTCGCAGTGGAATTGAGGCTAGTGAAGAGGTTCCTCTTGTGTCTTCGTCTTCTTCGTCGTCGTTGGCTGGTAGTGGACAAGTTGATGGTGAGGCTGCTGGGAATGGAACAGAAAATAATGGCAGGGATTCGTCTTCTTACCAGAGATATGATATTCAGCTGGTTGCTAAGTGGATTGAGCAGATTCTTCCCTTTTCGCTCTTGTTATTGGTTGTTTTCATCCGACAACATTTACAAGGTTTCTTTGTCACAATTTGGATAGCAGCTGTGATGTTCAAGTCAAATGAAATTGTTAAGAAGCAGACAGCTTTGAAGGGAGATAGGAAAGTCTCTTTGCTTGCTGGTATCGCTTTTGCTTTCATTCTTCATGTGATATGCATTTACTGGTGGTATCGAAATGATGATATTTTATATCCACTGGTCATGTTACCTCCTAACCCAACACCTTTCTGGCATGCAATATTCACCATCTTGGTCAATGATATATTGATGCGGCAAGTTGCAATGGCTTTTAAGTGTATCCTTCTTATATATTACAAAAAGGGGAAAGGTCATAACTTCCGTCGGCAGGCTCAAATGTTAACTCTTGTTGAGTACACGTTGCTGTTGTATCGCGCCTTGTTGCCAACACCGGTTTGGTACCGCTTTTTCTTGAATAGGGAATATGGAAGTCTCTTTTCGTCACTGACCACAGGGTTGTATTTAACTTTCAAGCTAACATCTGTGGTTGAGAAGGTCCAATGCTTCATTTCTGCCTTGAAAGCATTATCGAGAAAGGAAGTTCATTATGGGGTCTATGCCACAGCAGAACAGGTTACTGCTGCTGGTGACCTATGTGCTATATGCCAGGAGAAGATGCATTCCCCTATATTGTTGCGCTGTAAACACATTTTCTGCGAAGACTGTGTATCTGAGTGGTTTGAGAGAGAAAGGACTTGCCCCCTATGCAGAGCATTGGTTAAAGCAGCTGATCTTCGCACCTTCGGAGATGGATCAACAAGTTTGTTTTTCCAGTTGTTTTAA 1455 0.4254 METLGGNSSSSPSLSSASSSSSFGGVNSDDNNGSVTWYGMRLPSVNPFLSPISFLLDYSGILRSNNDSEGMIINNGVSGSELRSQVDAGAVGSGGSGAGEVAIRIIGAGENIHNQVGEVGYDDCGEELVGERSGTPALDDDDAEGRSGIEASEEVPLVSSSSSSSLAGSGQVDGEAAGNGTENNGRDSSSYQRYDIQLVAKWIEQILPFSLLLLVVFIRQHLQGFFVTIWIAAVMFKSNEIVKKQTALKGDRKVSLLAGIAFAFILHVICIYWWYRNDDILYPLVMLPPNPTPFWHAIFTILVNDILMRQVAMAFKCILLIYYKKGKGHNFRRQAQMLTLVEYTLLLYRALLPTPVWYRFFLNREYGSLFSSLTTGLYLTFKLTSVVEKVQCFISALKALSRKEVHYGVYATAEQVTAAGDLCAICQEKMHSPILLRCKHIFCEDCVSEWFERERTCPLCRALVKAADLRTFGDGSTSLFFQLF* 485
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal8g2116 484 SMART ring_2 423 460 IPR001841 -
Mal8g2116 484 MobiDBLite consensus disorder prediction 126 188 - -
Mal8g2116 484 MobiDBLite consensus disorder prediction 126 149 - -
Mal8g2116 484 ProSiteProfiles Zinc finger RING-type profile. 423 461 IPR001841 -
Mal8g2116 484 SUPERFAMILY RING/U-box 416 465 - -
Mal8g2116 484 PANTHER UNCHARACTERIZED RING FINGER-CONTAINING PROTEIN 1 484 IPR044235 GO:0061630|GO:1904294
Mal8g2116 484 CDD RING-HC_RNFT1_like 422 461 - -
Mal8g2116 484 MobiDBLite consensus disorder prediction 1 26 - -
Mal8g2116 484 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 1 484 - -
Mal8g2116 484 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 399 471 IPR013083 -
Mal8g2116 484 Pfam Zinc finger, C3HC4 type (RING finger) 421 465 - -
Mal8g2116 484 ProSitePatterns Zinc finger RING-type signature. 438 447 IPR017907 -
Mal8g2116 484 MobiDBLite consensus disorder prediction 154 188 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal8g2116 Mal-Chr8 44215696 44223139 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal8g2116 42 484 C3H Transcription Factor Family AT5G01960 60.714 0.0 540
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal8g2116 - K22379 zju:107414042 580.867