Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Mal8g2115 | ATGGGTCCGGAAACAAGAACAAATCTTCCACATTCCACAATAGAGGTAATCGACCTCGTATCCCATACAGACGACGATGAGGACGTTATGATCATCAATTTCATTCCCAAAAACACCCATCACCTCGTTTGCGAAATCTGCACGGATACTAAAACAATGAAGGACATTTTCTACATAAGCGGTTGCTCTCATGCATATTGCTCTAATTGCATAGCAAAGTACATCCATTCCAAGCTTCAAGATAACATCATCAACATTCAGTGTCCTTCTGTTTCCGGGTGCAGTGGTTGGTTAGAACCTGAGTTTTGCCGTTCTATTCTTCCGGTCGAGCTTTTTGAACTCTGGTGTAACAAGTTGTGCGAGGCTTTGTTCGATTCTCAGAAAGTCTATTGTCCCTTTCAAGATTGTTCTGCTCTTTTGATCAACGATGGAACTGAGGCGGCAATTAGAAATTCAGAATGTCCTCATTGTAATAGGATGTTTTGTGCACAATGTAAGATTCCATGGCATGAAGGAATTGAATGCACTGCGCCCGAGAGGGGGAAAGAAGAAGAAGTTAGGTTGATGCGCCTTGCGGAGAAATTGAAATGGAAGCGATGCCCTAATTGCAAATTTTATGTTTCCAAATCTAACGGCTGTCGCCGCATTTGTGAATAA | 657 | 0.4231 | MGPETRTNLPHSTIEVIDLVSHTDDDEDVMIINFIPKNTHHLVCEICTDTKTMKDIFYISGCSHAYCSNCIAKYIHSKLQDNIINIQCPSVSGCSGWLEPEFCRSILPVELFELWCNKLCEALFDSQKVYCPFQDCSALLINDGTEAAIRNSECPHCNRMFCAQCKIPWHEGIECTAPERGKEEEVRLMRLAEKLKWKRCPNCKFYVSKSNGCRRICE* | 219 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Mal8g2115 | 218 | Gene3D | - | 129 | 180 | - | - | |
| Mal8g2115 | 218 | ProSiteProfiles | TRIAD supradomain profile. | 40 | 218 | IPR044066 | - | |
| Mal8g2115 | 218 | Pfam | Zinc finger, C3HC4 type (RING finger) | 44 | 89 | IPR018957 | GO:0046872 | |
| Mal8g2115 | 218 | Pfam | IBR domain, a half RING-finger domain | 125 | 175 | IPR002867 | - | |
| Mal8g2115 | 218 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 38 | 125 | IPR013083 | - | |
| Mal8g2115 | 218 | SUPERFAMILY | RING/U-box | 40 | 122 | - | - | |
| Mal8g2115 | 218 | SUPERFAMILY | RING/U-box | 123 | 179 | - | - | |
| Mal8g2115 | 218 | PANTHER | RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING | 32 | 215 | IPR031127 | GO:0004842|GO:0016567 | |
| Mal8g2115 | 218 | ProSitePatterns | Zinc finger RING-type signature. | 62 | 71 | IPR017907 | - | |
| Mal8g2115 | 218 | ProSiteProfiles | Zinc finger RING-type profile. | 44 | 89 | IPR001841 | - | |
| Mal8g2115 | 218 | PANTHER | RBR-TYPE E3 UBIQUITIN TRANSFERASE | 32 | 215 | - | - | |
| Mal8g2115 | 218 | SMART | ibrneu5 | 113 | 175 | IPR002867 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Mal8g2115 | Mal-Chr8 | 44213008 | 44213664 | Dispersed/Transposed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Mal8g2115 | 38 | 216 | C3H Transcription Factor Family | AT2G19610 | 25.521 | 8.34e-13 | 64.7 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Mal8g2115 | K11975 | - | gmx:100803898 | 235.728 |