Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal8g2050 ATGAAGTGGGAAATGGAACTTCTCCCTCCTGCATCATACACTCCAAACTCCAATTGGTGTATCGAAGATAACATGAGCACAAAATGGACTCCTGAAGAGAACAAACTATTTGAAAATGCTCTTGCAGTTCATGATAAGGATACACCGGATCGATGGCATAAAGTCGCTGAAATGATACCGGGGAAGACGGTTGGTGATGTGATGAGACAGTATAAGGAATTAGAAGATGATGTTTGTAACATAGAAGCTGGATTGATTCCAGTTCCTGGTTATAATACTCCAACTTCACCCTTTACCTTAGATTGGGTGAACAGTTCTGATTATGATGGATTCAAAGGAAGTGGAAAGAGATCTTCTTCAATCAGACCTTCTGAGCATGAAAGGAAGAAAGGAGTGCCTTGGACTGAAGAGGAACACAAATTATTTCTACTAGGTCTCAAGAAGTATGGCAAAGGTGATTGGAGAAATATTTCGCGCAATTTCGTCATCACTAGAACTCCAACTCAAGTGGCAAGCCATGCTCAAAAGTATTTCATAAGACAACTTTCAGGAGGAAAAGACAAGAGGAGAGCAAGCATACATGACATAACAACAGTTAATATCTCAGAAAAAATTGGAACTTGTTCTTCAGAAGACACCAATAATAGATCCACTTCACCACAAAATTCCATGTTACTTTCACACCAGCAGCAGCAACAACAAACTTCTACTACAACAAATTTTCACTGGAGGAATAATCATCAAAATGCTATGGCTTTCAATCCAGCTCATGAACAAGTTTTTATAGATCCTCATGGTTTTAACTCCTACGAGGTTAAAATGCAAGACCAAAATCTTCAAAAGGGTCTTGTTCATGAGTCTTCTTATCCACATAACATGGTTTTCCAAATGCAACATTCATCACAACATTATTCACATGCATAA 924 0.3842 MKWEMELLPPASYTPNSNWCIEDNMSTKWTPEENKLFENALAVHDKDTPDRWHKVAEMIPGKTVGDVMRQYKELEDDVCNIEAGLIPVPGYNTPTSPFTLDWVNSSDYDGFKGSGKRSSSIRPSEHERKKGVPWTEEEHKLFLLGLKKYGKGDWRNISRNFVITRTPTQVASHAQKYFIRQLSGGKDKRRASIHDITTVNISEKIGTCSSEDTNNRSTSPQNSMLLSHQQQQQQTSTTTNFHWRNNHQNAMAFNPAHEQVFIDPHGFNSYEVKMQDQNLQKGLVHESSYPHNMVFQMQHSSQHYSHA* 308
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal8g2050 307 ProSiteProfiles SANT domain profile. 24 77 IPR017884 -
Mal8g2050 307 ProSiteProfiles Myb-like domain profile. 28 75 IPR001005 -
Mal8g2050 307 MobiDBLite consensus disorder prediction 113 132 - -
Mal8g2050 307 Pfam Myb-like DNA-binding domain 28 72 IPR001005 -
Mal8g2050 307 Pfam Myb-like DNA-binding domain 133 178 IPR001005 -
Mal8g2050 307 CDD SANT 133 178 IPR001005 -
Mal8g2050 307 SMART sant 130 180 IPR001005 -
Mal8g2050 307 SMART sant 25 77 IPR001005 -
Mal8g2050 307 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 126 182 IPR017930 -
Mal8g2050 307 Gene3D - 22 88 - -
Mal8g2050 307 CDD SANT 28 74 IPR001005 -
Mal8g2050 307 SUPERFAMILY Homeodomain-like 27 82 IPR009057 -
Mal8g2050 307 PANTHER MYB TRANSCRIPTION FACTOR MYB51 1 283 - -
Mal8g2050 307 ProSiteProfiles SANT domain profile. 134 182 IPR017884 -
Mal8g2050 307 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 129 181 IPR006447 GO:0003677
Mal8g2050 307 ProSiteProfiles Myb-like domain profile. 126 178 IPR001005 -
Mal8g2050 307 PANTHER DUPLICATED HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 1 283 IPR043363 -
Mal8g2050 307 SUPERFAMILY Homeodomain-like 128 181 IPR009057 -
Mal8g2050 307 Gene3D - 132 182 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal8g2050 Mal-Chr8 42384291 42385919 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Mal8g2050 Myb_DNA-binding 1.5e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal8g2050 - - gmx:778181 430.639
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal8g2050 8 42384291 42385919 Mal8g2050 8 42384291 42385919 ECH
Mal8g2050 8 42384291 42385919 Mal8g1171 8 18262409 18263963 ECH
Mal8g2050 8 42384291 42385919 Mal2g3347 2 50212009 50213507 ECH
Mal3g2200 3 90017519 90019273 Mal8g2050 8 42384291 42385919 ECH