Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal8g1957 ATGCTTTCAGGGGATATTCCTCCAAACCAAACCATTTACATTAAGAATCTCAATGAAAAGATCAAGAAAGACGAGTTGAAACGATCTCTATACTGCTTATTCTCTCAATATGGAAGGATTTTGGACATTATTGCTCTAAAGACACCCAAGCTTCGAGGGCAGGCATGGGTTTGTTTTAGTGAATTAACTGCTGCCAGTAATGCAGTGCGACAGATGCAAAACTTCCCGTTTTATGAAAAACCCATGAGAATTCAATATGCAAAAACAAAGTCAGATTGTATTGCTAAAGAAGAGGGAAGCTTTGTTCCAAGGGAAAAGAAAAAGAAACAAGAGGAGAAAGCTGAGAAAAAGAGGTATGCTGCTGATGAATCAAAACAATCTGCCGTGCCTAATGGAACACATGGTGCAAGCAATGGTGGCTCAACAGCCCCATTCCGTCCAAGGTCCGGGACCCAAGAGGCAGCTGCTCCCAACAATATTTTGTTCATAGAGAATTTGCCTTACGAAACTACTGGCAGGATGCTTGAAATGCTCTTCGAACAATACCCAGGTTTTAAGGAAGTGCGCTTGATCGAAGCAAAGCCAGGTATCGCGTTCGTAGATTTCGAAGATGAGGGGCAATCGTCCATGGCAATGCAGGCTCTTCAAGGCTTCAAAATCACCCCTCAGAATCCCATGATTATAAACTTTGCTAAGAAGTAA 702 0.4231 MLSGDIPPNQTIYIKNLNEKIKKDELKRSLYCLFSQYGRILDIIALKTPKLRGQAWVCFSELTAASNAVRQMQNFPFYEKPMRIQYAKTKSDCIAKEEGSFVPREKKKKQEEKAEKKRYAADESKQSAVPNGTHGASNGGSTAPFRPRSGTQEAAAPNNILFIENLPYETTGRMLEMLFEQYPGFKEVRLIEAKPGIAFVDFEDEGQSSMAMQALQGFKITPQNPMIINFAKK* 234
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal8g1957 233 CDD RRM1_U1A_like 11 88 - -
Mal8g1957 233 MobiDBLite consensus disorder prediction 104 152 - -
Mal8g1957 233 CDD RRM2_U1A_like 157 228 - -
Mal8g1957 233 MobiDBLite consensus disorder prediction 104 123 - -
Mal8g1957 233 SMART rrm1_1 160 229 IPR000504 GO:0003723
Mal8g1957 233 SMART rrm1_1 11 85 IPR000504 GO:0003723
Mal8g1957 233 Gene3D - 4 116 IPR012677 -
Mal8g1957 233 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 10 89 IPR000504 GO:0003723
Mal8g1957 233 PANTHER U1 SMALL NUCLEAR RIBONUCLEOPROTEIN A/U2 SMALL NUCLEAR RIBONUCLEOPROTEIN B 4 233 - -
Mal8g1957 233 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 159 233 IPR000504 GO:0003723
Mal8g1957 233 PANTHER U1 SMALL NUCLEAR RIBONUCLEOPROTEIN A 4 233 - -
Mal8g1957 233 MobiDBLite consensus disorder prediction 126 152 - -
Mal8g1957 233 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 161 220 IPR000504 GO:0003723
Mal8g1957 233 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 12 81 IPR000504 GO:0003723
Mal8g1957 233 Gene3D - 149 233 IPR012677 -
Mal8g1957 233 SUPERFAMILY RNA-binding domain, RBD 8 221 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal8g1957 Mal-Chr8 40499678 40504278 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal8g1957 3 233 Eukaryotic Initiation Factors Gene Family AT1G71770 22.785 4.84e-07 48.1
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal8g1957 8 40499678 40504278 Mal8g1957 8 40499678 40504278 ECH