Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal8g1923 ATGCCCTCAGCTCAAGATCCATTCTACGTTGTCAAATCCGAGATTCAAGAATCTATTGATAATCTGCAATCTACTTTTGAGCAATGGAAACGTACTTCTGATGCTGCAGAGCGAGTACGGGTTACGAAGGAGGTTCTTGCTGGATGCGAAAGTATAGAGTGGCAGGTGGATGAATTGGAAAAAGCAATTGCTGTTGCTGCTAGAGAACCTTCTTGGTATGGCATTGATGACTTGGAGATTGAAAATCGGAGGACATGGACCAGCAGTGCTCGTACTCAGGTTGGCACAATAAAGAAAACGGTGGATGCTGGAAAGAGCTCAAACACAAGCATTAATGGGATGCACCGAGAACTAATGAGGCTACCGGATTCCTATCAACCTTATACATCCAACCAGAATGCTGCCAATGATAATGATGATTTCATTCAATCAGAATCAGATAGACAGACACTTCTTATAAAGCAACAGGACGAGGAGTTAGATGAACTTAGTTTAAGCGTACAAAGAATTGGAGGCGTTGGACTCACAATACATGAAGAACTCCTTGCCCAGGAAAAGATTATAGACGAACTTGGTAACGAGATGGACAGTACATCAAATCGTCTAGATTTTGTCCAAAAAAAAGTGGCAATGGTTATGAAGAAAGCTAGTGCAAAGGGACAGATCATGATGATATTGGGATTGTTGGCCCTATTCATTTTCCTATTTTTCTTAGTCTTCCTTACCTAG 729 0.4156 MPSAQDPFYVVKSEIQESIDNLQSTFEQWKRTSDAAERVRVTKEVLAGCESIEWQVDELEKAIAVAAREPSWYGIDDLEIENRRTWTSSARTQVGTIKKTVDAGKSSNTSINGMHRELMRLPDSYQPYTSNQNAANDNDDFIQSESDRQTLLIKQQDEELDELSLSVQRIGGVGLTIHEELLAQEKIIDELGNEMDSTSNRLDFVQKKVAMVMKKASAKGQIMMILGLLALFIFLFFLVFLT* 243
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal8g1923 242 Pfam Syntaxin 6, N-terminal 6 98 IPR015260 GO:0016020|GO:0048193
Mal8g1923 242 Coils Coil 49 69 - -
Mal8g1923 242 Pfam SNARE domain 187 238 IPR000727 -
Mal8g1923 242 Coils Coil 12 39 - -
Mal8g1923 242 Gene3D - 2 104 - -
Mal8g1923 242 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 150 212 IPR000727 -
Mal8g1923 242 PANTHER SYNTAXIN 1 241 IPR045242 -
Mal8g1923 242 SUPERFAMILY SNARE fusion complex 148 212 - -
Mal8g1923 242 SMART tSNARE_6 145 212 IPR000727 -
Mal8g1923 242 Gene3D - 157 221 - -
Mal8g1923 242 Coils Coil 188 208 - -
Mal8g1923 242 PANTHER SYNTAXIN PROTEIN 1 241 - -
Mal8g1923 242 SUPERFAMILY t-snare proteins 5 101 IPR010989 GO:0016020|GO:0016192
Mal8g1923 242 CDD SNARE_Qc 153 210 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal8g1923 Mal-Chr8 39530125 39533623 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal8g1923 55 242 SNARE and Associated Proteins AT1G28490 68.421 4.79e-88 257
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal8g1923 K08500 - gmx:100793612 352.829