Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal8g1831 ATGCAGCCTCACTGGCGAAGGTGTGTCTGGCAATCGGCACCGGAGAAGGAATCAAAACATTTCATGAAAAGCCATACTTCCCTCACCCATTCATGCCAAAGAGATAATGGTGTGTTATATCACTTACCAATGCAGAGAATTCCAGATGAATTTATAACAAGATTAGAGAATGAACTCAAGAATGTTGCTACAATTAGTGTTCCAGATGGTTGTGTTTGGAAAATGGAATTGAAGAAATGTGACGAGCATGTTTTCTTTTGCAACAAATGGCAAGAGTTCGTAAAATACTATTCTATAGGATATGGTTGCTACCTTTCTTTCAGATATGAAGGGAATTCAAATACTAATGGAGAACCAAACACAAAGTATCCTAGTCCTAGAAAAAAGTCCAAGGTTGAAACAAGTGAGAGTCATGGGAAAAAGATCAAAAGCATGACTAAACATGCTTCTAAAAGAGCAGAGGATGCTGCCAATGAATTCAATCCTAACAACCCTTATTTTCGTTCCAAAATCGTTAAAGGAAAATATGCGTATGTTAATTCTGATTTTGCTTCAAAGTATCTGAAGCTAAATGTTCCTATAAAGCTCCAAAATTCTCATGGAGAGCAGTGGGTGGTTTTTCGCATATCACATGATGCCAGATCATCAGCAATGCAAATAACGAGGGGATTTCCTATATTTCAAAAGGACAACAACCTGTCACATGGAGATTATTGTGTTTTTGAGCTGATCAAGAAGAAGTCGGTTGTGCTAAAAGTCACAATGTTTCGTGCAGTTGACTACCGCGATTAA 792 0.3788 MQPHWRRCVWQSAPEKESKHFMKSHTSLTHSCQRDNGVLYHLPMQRIPDEFITRLENELKNVATISVPDGCVWKMELKKCDEHVFFCNKWQEFVKYYSIGYGCYLSFRYEGNSNTNGEPNTKYPSPRKKSKVETSESHGKKIKSMTKHASKRAEDAANEFNPNNPYFRSKIVKGKYAYVNSDFASKYLKLNVPIKLQNSHGEQWVVFRISHDARSSAMQITRGFPIFQKDNNLSHGDYCVFELIKKKSVVLKVTMFRAVDYRD* 264
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal8g1831 263 SUPERFAMILY DNA-binding pseudobarrel domain 43 114 IPR015300 -
Mal8g1831 263 MobiDBLite consensus disorder prediction 124 155 - -
Mal8g1831 263 Gene3D - 144 262 IPR015300 -
Mal8g1831 263 Gene3D - 12 117 IPR015300 -
Mal8g1831 263 SUPERFAMILY DNA-binding pseudobarrel domain 160 257 IPR015300 -
Mal8g1831 263 Pfam B3 DNA binding domain 177 258 IPR003340 GO:0003677
Mal8g1831 263 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR VRN1 127 258 - -
Mal8g1831 263 SMART B3_2 167 259 IPR003340 GO:0003677
Mal8g1831 263 SMART B3_2 21 130 IPR003340 GO:0003677
Mal8g1831 263 ProSiteProfiles B3 DNA-binding domain profile. 194 259 IPR003340 GO:0003677
Mal8g1831 263 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR VRN1 46 114 - -
Mal8g1831 263 PANTHER B3 DOMAIN-CONTAINING 127 258 - -
Mal8g1831 263 CDD B3_DNA 183 257 IPR003340 GO:0003677
Mal8g1831 263 CDD B3_DNA 19 115 IPR003340 GO:0003677
Mal8g1831 263 PANTHER B3 DOMAIN-CONTAINING 46 114 - -
Mal8g1831 263 MobiDBLite consensus disorder prediction 115 157 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal8g1831 Mal-Chr8 37049127 37050887 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal8g1831 136 261 REM Transcription Factor Family AT1G49480 37.121 1.43e-17 77.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Mal8g1831 B3 5.4e-10 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal8g1831 - - mtr:MTR_5g070440 378.252