Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal8g1801 ATGTGCGGTGGTTCCAAGAAAAATACTTCTCAAACGGATTTTATCATGGGGTGTGAATATCAGAATGGGAATAAAGATCGGCAGCATCATGAGGTTTCTTCTTTGCTTGAATTTTCAGCTGCAGATGATGTGATTGGTTTAAAAAATGCGGTTGAAAACGAGGGTTTTGATGTTGATGAGGTTGGTTTGTGGTATGGAAGGAGGGTTGGTTCGAATAAATTGTGTTATGAAGAGAGGACTCCTCTCATGGTTTCGGCTATGTTTGGAAGTTTGAATGTATTGGTTTATATTCTTGGAACAGGTCGCGTTGATGTTAATAGATCTAGTGGATCCGATGGTGCTACTTCTCTTCATTGTGCTGTTGCTGGAGGTTCTGCTGCTTCCGCCGAGATTATTAGGCTTTTGCTTGATGCATCGGCGGATGCTAGTGCTGTTGATGCCAATGGTAACCGACCTGTTGATTTGATTGGCTTTGTTGCCAATTCTATCTTTGATCGGAGGAAGAGGACGCTACAATCTCTTTTGGAGGGTACGGGCTGTGCTGATCAGACATGTCTTACGTTTCCTGAGACAGTTGACGACATTGATGATTATCAAAGGCAAGATGTAAACACGCTTCGTGTTTCGAAAGATTATCCTGTTGATCTCTCTCTTCCAGACATTAAGAATGGGATATATATTACCGACGAGTTTAGGATGTATACATTCAAAGTGAAGCCTTGTTCAAGGGCATATTCTCATGATTGGACCGAGTGTCCCTTTGTTCATCCGGGGGAAAATGCAAGGCGACGCGATCCGAGGAAATATAATTATAGCTGTGTCCCTTGTCCTGAGTTTCGCAAAGGATCGTGCAGCAAAGGAGATTCTTGTGACTATGCACATGGTATTTTTGAGTGTTGGCTTCATCCTGCGCAGTATAAGACACGGCTTTGCAAGGATGAGGGTTCATGCACAAGAAGAGTTTGCTTCTTTGCTCATAGGATTGAGGAGCTTCGCCCCTTGTATGCTTCTACCGGTTCTGCTATTCCATCTCCTAGGTCATATTACAGTACTGCTTCTACATTGGAGATGGGTTCACTTAGCCCCATGTCACTCGGTTCTCCATCAATTTTGATACCGCCGTCCTCAACGCCGCCTTTGACTCCATGTGGAGCATCGTCTCCCGTTGCTGCTGCACCCATGTGGCAGACACTGTCTAATGTTTCGGTCCCTTCCCTTCAGCTTCCCAAAAGCAGGTTGAAGACTAGAATGACCGCTAGAGATATTGATTCGGATATTGCAATGCTTAGGCTTGAAACTGAACGACGAAGGCAGCAGCTAATGATGGACGAGATATCCAGTCTTTCCTCTCCTTCCAACTGGCAAAATTCCATGCCTAACAGTCCATCTTTTCCGGTTTCTTTGAGCGATCGTACAACCGGGGAACTAAATAGGTTTTCAGGGGTGAAGCCTACTAACCTTGAAGACACTTTCGGGTCTGTTGATCCACCAATGTTGCATAAATTCCACAGAATCTCACTAGATGCTGCAGGACCTCAGTTACAATCTCCAACTGGAATCCAAATGCGTCCAACTATGAACCAGCAGCTGCAACAAAACTATTCTTCAGGCCATTCCACTTCCACTGTGATTGGATCGCCGACCTATAGGTTTGATCCATCCCGCGAGTTATCCGCGTTGGCTTTGAATGCAAGAGCTGCTGCCTTTTCAAAGCGGAGCCAGAGCTTTATCGAGTGCAGTGTCACAAACCGTCATTCTGAGCTTCTTTCTCCTGCTAAGCCTTATGCTTTTTCCAACTGGGGCTCACCCGATGGACAATTGGATTGGGCTGTACACGGAGAAGAACTGAATAAGCTGAGGAAATCTTCTTCTTTTGGATTTCAAACCAGCAGTACTCCTTTAACTCCAGCTGCAGCTAGGGCACATGAAAATGACGATGAACCAGATGTGTCTTGGGTTAATTCACTTGTGAAGGATGCTACGCCGCAGGAATATGGTCGGTTTAGCGATGAAGATCAGAAAAGGAAACTTCAGCGCCATCTTAACAATGGAACGGATGTGATTCCGGCGTGGTTGGAGCAATTGTACATGGATCAGGAGCAAATGGTGCAGTGA 2115 0.4539 MCGGSKKNTSQTDFIMGCEYQNGNKDRQHHEVSSLLEFSAADDVIGLKNAVENEGFDVDEVGLWYGRRVGSNKLCYEERTPLMVSAMFGSLNVLVYILGTGRVDVNRSSGSDGATSLHCAVAGGSAASAEIIRLLLDASADASAVDANGNRPVDLIGFVANSIFDRRKRTLQSLLEGTGCADQTCLTFPETVDDIDDYQRQDVNTLRVSKDYPVDLSLPDIKNGIYITDEFRMYTFKVKPCSRAYSHDWTECPFVHPGENARRRDPRKYNYSCVPCPEFRKGSCSKGDSCDYAHGIFECWLHPAQYKTRLCKDEGSCTRRVCFFAHRIEELRPLYASTGSAIPSPRSYYSTASTLEMGSLSPMSLGSPSILIPPSSTPPLTPCGASSPVAAAPMWQTLSNVSVPSLQLPKSRLKTRMTARDIDSDIAMLRLETERRRQQLMMDEISSLSSPSNWQNSMPNSPSFPVSLSDRTTGELNRFSGVKPTNLEDTFGSVDPPMLHKFHRISLDAAGPQLQSPTGIQMRPTMNQQLQQNYSSGHSTSTVIGSPTYRFDPSRELSALALNARAAAFSKRSQSFIECSVTNRHSELLSPAKPYAFSNWGSPDGQLDWAVHGEELNKLRKSSSFGFQTSSTPLTPAAARAHENDDEPDVSWVNSLVKDATPQEYGRFSDEDQKRKLQRHLNNGTDVIPAWLEQLYMDQEQMVQ* 705
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal8g1801 704 SMART ANK_2a 77 107 IPR002110 GO:0005515
Mal8g1801 704 SMART ANK_2a 112 144 IPR002110 GO:0005515
Mal8g1801 704 ProSiteProfiles Zinc finger C3H1-type profile. 270 297 IPR000571 GO:0046872
Mal8g1801 704 ProSiteProfiles Ankyrin repeat region circular profile. 112 146 - -
Mal8g1801 704 SUPERFAMILY Ankyrin repeat 48 160 IPR036770 -
Mal8g1801 704 Pfam Ankyrin repeats (many copies) 79 136 IPR002110 GO:0005515
Mal8g1801 704 PANTHER UNKEMPT FAMILY MEMBER 22 703 IPR045234 -
Mal8g1801 704 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 66 22 703 - -
Mal8g1801 704 Gene3D - 270 333 - -
Mal8g1801 704 Gene3D - 27 170 IPR036770 -
Mal8g1801 704 SMART c3hfinal6 305 328 IPR000571 GO:0046872
Mal8g1801 704 SMART c3hfinal6 270 296 IPR000571 GO:0046872
Mal8g1801 704 ProSiteProfiles Ankyrin repeat profile. 112 147 IPR002110 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal8g1801 Mal-Chr8 36473524 36475638 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal8g1801 1 699 C2H2 Transcription Factor Family AT5G12850 35.224 2.02e-133 408
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Mal8g1801 Ank_4 4.6e-05 CL0465
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal8g1801 - - aprc:113846970 979.933
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal8g1801 8 36473524 36475638 Mal8g1801 8 36473524 36475638 ECH
Mal8g1801 8 36473524 36475638 Mal2g3284 2 48972950 48974848 ECH