Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal8g1753 ATGACTTTTCCAGATGATATTCCAACCTGTAAGATGTCACCGCCGCAATTCACTTCATTGAACAACAATGACTTTGAATCAAATTCAACATTGGATCATCCCTATTCCTTCAATAGGGCAACAACATCCCATTCCAATGCATTGATATGCCCTCCTTCAAGGATGACTTTGCCTCCATCAAATAGAGCAGGCCATATTTTCTACAAGACTGGAATTTGTTTTATGTTCAGATTTGATAAATGTAGGAACGATAAAAAAATCATACACAAGATGAAACTATGCAAGAAATATTGCAATGGAGAGGAATGTCCATATGGAGATAAGTGTAGTTTTCTTCATGAAGATCCTGCACAGTTTAGAGAAATACTTACAGAATCGAAAATCGAAGTGCAAGGTTTTTTAAATCTCAGATCAAATAGTTGCTCTTCGAATCACATATCTAGGGTTTATGGCTCGTGGAGTTCTTCGAATCCTTTCACCAGAGCAAGGTGA 492 0.372 MTFPDDIPTCKMSPPQFTSLNNNDFESNSTLDHPYSFNRATTSHSNALICPPSRMTLPPSNRAGHIFYKTGICFMFRFDKCRNDKKIIHKMKLCKKYCNGEECPYGDKCSFLHEDPAQFREILTESKIEVQGFLNLRSNSCSSNHISRVYGSWSSSNPFTRAR* 164
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal8g1753 163 ProSiteProfiles Zinc finger C3H1-type profile. 88 116 IPR000571 GO:0046872
Mal8g1753 163 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 39 1 84 - -
Mal8g1753 163 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 39 86 130 - -
Mal8g1753 163 Gene3D - 83 121 - -
Mal8g1753 163 SMART c3hfinal6 88 115 IPR000571 GO:0046872
Mal8g1753 163 Pfam CCCH-type zinc finger 92 113 IPR041367 -
Mal8g1753 163 SUPERFAMILY CCCH zinc finger 87 115 IPR036855 GO:0046872
Mal8g1753 163 PANTHER CCCH ZINC FINGER/TIS11-RELATED 86 130 IPR045877 GO:0003729
Mal8g1753 163 PANTHER CCCH ZINC FINGER/TIS11-RELATED 1 84 IPR045877 GO:0003729
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal8g1753 Mal-Chr8 35355930 35358396 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Mal8g1753 zf-CCCH_4 8.5e-06 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal8g1753 - - mtr:MTR_4g113890 159.073