Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal8g1715 ATGTGGACTGTACCTGATCGTACGAATCCTTCCGAGATTGGAAGCATTAATATGATCTTGCTTGATGAAAAGTGTGCTAAAATTCATGCCACTATAAGGAAGAATATTCTACCAATTTTCAAAGATCAGATTGAAGAGGGTGCCTCTTATGTTTTTGAAAAATTCATGGTCGCTCAAAATGATCCAACATTCAAGACGACAGACCATAGGTACAAATTGAACTTTATGGGAGGAACAACTGTTTTCAAGGTTAATGCTACTGAAATCCCTCAAATGTCTTTCAACTTTATGTCATTCTTTGAGATATTGGCTGCCCACAAGGAAGATCGTTTACTTGATGTTATTGGTCATGTTGTTGAGAAGGACTCTGTGAAGAATGGAAAAACTGACAAGGTCATGGACGCAACTTTGGAGGATTTGCAGGGGAATAGAATACATTGCACCCTATGGGATGACTATGCTGTCAAGATGCAGAAATGCTTGGATAGTCATGACTCATCACTTCCTGTTGTAGTTGTCTTTCAGCTCTGCAAACTTAAGAAATATTACGGTGCAATGGGCATCTCTAATGCTTTTTATGGTACCAAAATGCTCTTGAATCCTAATTTACCTGAAGTGTCTGACTATATAGAGAGGATGAATGGTGGCGATGTTGAGTACACTCAAGTTGTAAGCCAGATGAGCGGCCCAACTGTGTTGTCTTTGTCTGATGATTTACTGCAGACTAATAGAATGACCATTGAGGACTTGCTTGAGACATCCGAGAAATGTGTTGTAACCGTGCTGGCAAGAACATGTGAGCTGGAAATTGATGGTGGATGGTTTTATCATGCATGTAGCAAGTGTGCAACTAGGATTATTGCTATTAACGGACAAATCTATTGCGACAAATGCAGCATGCCAAGAACTGCCGTTCCTAGGTTCAAAGTTAATATTCAAGTGATAGATAATACTGGATCAACTACATTTGTTCTGTTTGACCGTGTTGTATCTCAAGTCGGCGGTAGGACTGCACAAGATTTCCTTGATTCGATGAATGAGCCAGACAATGCTCTTGAATACCCCTCAGAGCTCAATATGTTTGTCGACAAGCGAATGCTTTTCAAGGTTGAAGTCGGTGATGCGAACCTATACCGTAACTGGCGCAGCTACACTGTCAAGAAGCTGACTATGGATGAGGAAATCATTAAGCAGTTTTTGACACTGCATGGAATAAATGATGTTAATGATGAAGAGGAAGCTGCTTATGAAGACCATGTTGCTGGGTTAGGTGATGATGATCCCTTGGTAAATGTTGAAGGAGTTGATTCAAGTAATAAAGATGACGTTGCTGCGGTTGATTCGGATGTGACTCCAACTAGCAAAGGTTTGGGAAATAGATCTGCTGATAGTGTTGGATCATTGGATGATATTGAGATCATTGGGGAGGATGCTTCTACCACAAAGATGCCAAAAATGACGCGTGTCAAGATTGAAGATGATGATTGA 1488 0.4052 MWTVPDRTNPSEIGSINMILLDEKCAKIHATIRKNILPIFKDQIEEGASYVFEKFMVAQNDPTFKTTDHRYKLNFMGGTTVFKVNATEIPQMSFNFMSFFEILAAHKEDRLLDVIGHVVEKDSVKNGKTDKVMDATLEDLQGNRIHCTLWDDYAVKMQKCLDSHDSSLPVVVVFQLCKLKKYYGAMGISNAFYGTKMLLNPNLPEVSDYIERMNGGDVEYTQVVSQMSGPTVLSLSDDLLQTNRMTIEDLLETSEKCVVTVLARTCELEIDGGWFYHACSKCATRIIAINGQIYCDKCSMPRTAVPRFKVNIQVIDNTGSTTFVLFDRVVSQVGGRTAQDFLDSMNEPDNALEYPSELNMFVDKRMLFKVEVGDANLYRNWRSYTVKKLTMDEEIIKQFLTLHGINDVNDEEEAAYEDHVAGLGDDDPLVNVEGVDSSNKDDVAAVDSDVTPTSKGLGNRSADSVGSLDDIEIIGEDASTTKMPKMTRVKIEDDD* 496
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal8g1715 495 PANTHER BNAC07G49340D PROTEIN 6 458 - -
Mal8g1715 495 Gene3D - 234 400 IPR012340 -
Mal8g1715 495 SUPERFAMILY Nucleic acid-binding proteins 242 389 IPR012340 -
Mal8g1715 495 Gene3D - 1 83 IPR012340 -
Mal8g1715 495 Pfam Replication factor-A C terminal domain 273 374 IPR013955 -
Mal8g1715 495 Pfam Domain of unknown function DUF223 18 103 IPR003871 -
Mal8g1715 495 CDD RPA1_DBD_C 271 388 IPR013955 -
Mal8g1715 495 SUPERFAMILY Nucleic acid-binding proteins 10 84 IPR012340 -
Mal8g1715 495 PANTHER REPLICATION FACTOR A 1, RFA1 6 458 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Mal8g1715 495 SUPERFAMILY Nucleic acid-binding proteins 94 215 IPR012340 -
Mal8g1715 495 CDD RPA1_DBD_B_like 113 213 - -
Mal8g1715 495 Gene3D - 87 222 IPR012340 -
Mal8g1715 495 CDD RPA1_DBD_A_like 1 81 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal8g1715 Mal-Chr8 34001254 34003955 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal8g1715 17 372 Core DNA Replication Machinery Family AT5G08020 24.397 1.90e-17 83.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal8g1715 - - mtr:MTR_1g105785 459.914