Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal8g1565 ATGGGAGGGAAGAAAGTGAAGCTTGCATTCATAACCAATGACACAGCAAGGAAAGCAACTTATAAGAAAAGGGTAAAAGGTTTGATGAAGAAGCTGAATGAAATCACAACCCTATGTGGAGTTAAGGCATGTGCTGTAGTTTACAAGCCTGATGATCTTGAACCACAAATATGGCCATCCATTCAAGGAGTCCAAAGTGTGCTGGTCCGGTTCTTGCATATTCCGGAATTCGAACGGGGCCGAAAGATGTTTAACCATGAGAGTTACTTGAAGGAACAGATTCAAAAGCTGAATGAGAAGTTGAAGAAAATAACAAAGGAGAATAGGATGATGGAGTTGAGTCTTCAATTGTATCACTATCTTGAGGCAGGGAAGGTTCCAGAGGATTTAAGCACTTCTGATCAGAATGATCTTACATATGTGATTGATGAGAAAATGAAGGAAATTGATTTGAAGATAATGCAATTGGAGAAGGACCAGAGGGTTTAG 489 0.3988 MGGKKVKLAFITNDTARKATYKKRVKGLMKKLNEITTLCGVKACAVVYKPDDLEPQIWPSIQGVQSVLVRFLHIPEFERGRKMFNHESYLKEQIQKLNEKLKKITKENRMMELSLQLYHYLEAGKVPEDLSTSDQNDLTYVIDEKMKEIDLKIMQLEKDQRV* 163
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal8g1565 162 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Mal8g1565 162 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Mal8g1565 162 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 159 - -
Mal8g1565 162 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL80 1 159 - -
Mal8g1565 162 Gene3D - 13 119 IPR036879 GO:0003677|GO:0046983
Mal8g1565 162 SUPERFAMILY SRF-like 3 95 IPR036879 GO:0003677|GO:0046983
Mal8g1565 162 Coils Coil 87 114 - -
Mal8g1565 162 CDD MADS_SRF_like 2 83 IPR033897 GO:0000981|GO:0000987|GO:0045944
Mal8g1565 162 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 51 IPR002100 GO:0003677|GO:0046983
Mal8g1565 162 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Mal8g1565 162 ProSiteProfiles MADS-box domain profile. 1 48 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal8g1565 Mal-Chr8 30526589 30527077 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal8g1565 1 153 Type I MADS-box Gene Family AT5G48670 43.791 2.17e-36 126
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Mal8g1565 SRF-TF 2.8e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal8g1565 - - cam:101507243 233.032