LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Mal8g1557	ATGGATCTCCTCCTTCTTGAAAAGACCCTTTTAGCCCTCTTCATCGCCGCCACAATCGCCGTAACCGTCTCAAAACTCCGCGGCAAACGCTTCAAACTCCCACCAGGTCCAATCCCAGTCCCTATCTTCGGTAACTGGCTTCAAGTCGGCGATGATCTCAACCACCGTAATCTCACCGATTACGCCAAACGCTTCGGTGAAATTTTCCTCCTCCGTATGGGACAACGCAACCTCGTCGTCGTTTCTTCACCGGAACTCGCTAAAGAAGTTCTTCACACACAAGGTGTTGAATTCGGCTCACGTACTCGTAATGTAGTTTTTGATATTTTCACAGGAAAAGGACAAGACATGGTGTTCACCGTATACGGTGAACACTGGCGTAAAATGCGGAGAATTATGACAGTTCCATTCTTCACAAACAAAGTTGTTCAACAGTACAGATTTGGTTGGGAATCTGAAGCTGCTAGTGTTGTTGATGATGTTAAGAACAACGCCGAAGCGAGTGTTAATGGAATTGTGATAAGGAAAAGATTGCAATTGATGATGTATAATATTATGTATAGGATTATGTTTGATAGAAGATTTGAAAGTGAAGAAGATCCTTTGTTTGTGAAATTGAAAGCTTTGAATGGTGAAAGGAGTCGTTTGGCTCAAAGCTTTGAGTATAATTATGGTGATTTTATTCCAATTTTGAGACCTTTTTTGAAAGGTTATTTGAAGATTTGTAAAGAGGTTAAAGATCGTAGGTTGCAGCTTTTCAAAGACTATTTTGTTGATGAAAGAAAGAAGCTTGGAAGCACCAAGAGCACAAGCAATGAAGGACTTAAATGTGCTATTGATCACATTTTGGATGCTCAAAAGAAGGGAGAGATCAATGATGACAACGTTCTTTACATTGTTGAGAACATCAATGTTGCTGCTATTGAAACAACACTATGGTCAATTGAATGGGGCATTGCTGAGCTAGTGAACCACCAAGACATCCAAAACAAAGTAAGAGAAGAGATGGACAAAGTTCTTGGACCAGGACACCAAGTGACTGAGCCAGATCTCCACAAGCTACCTTACCTACAAGCTGTGATCAAGGAGACACTTCGTCTTCGAATGGCGATCCCGCTCCTCGTCCCACACATGAACCTTCATGATGCAAAGCTTGGTGGTTTCGACATCCCTGCTGAGAGCAAGATATTGGTCAATGCTTGGTGGCTCGCAAACAACCCGGCTCACTGGAAAAAGCCGGAGGAATTCAGGCCCGAAAGGTTCTTGGAGGAAGAGTCTCATGTCGAAGCTAATGGAAACGATTTTAGGTACCTTCCTTTCGGTGTTGGCAGAAGAAGTTGCCCTGGAATTATTCTTGCTTTACCTATCCTTGGTATCACTATTGGGCGTTTGGTTCAGAATTTCGAGCTTTTACCTCCACCTGGACAATCTAAGATTGACACTTCTGAGAAAGGAGGACAATTTAGTTTGCACATACTCAAACATTCCACCATTGTTGCTAAGCCAAGATCATTTTAA	1518	0.4249	MDLLLLEKTLLALFIAATIAVTVSKLRGKRFKLPPGPIPVPIFGNWLQVGDDLNHRNLTDYAKRFGEIFLLRMGQRNLVVVSSPELAKEVLHTQGVEFGSRTRNVVFDIFTGKGQDMVFTVYGEHWRKMRRIMTVPFFTNKVVQQYRFGWESEAASVVDDVKNNAEASVNGIVIRKRLQLMMYNIMYRIMFDRRFESEEDPLFVKLKALNGERSRLAQSFEYNYGDFIPILRPFLKGYLKICKEVKDRRLQLFKDYFVDERKKLGSTKSTSNEGLKCAIDHILDAQKKGEINDDNVLYIVENINVAAIETTLWSIEWGIAELVNHQDIQNKVREEMDKVLGPGHQVTEPDLHKLPYLQAVIKETLRLRMAIPLLVPHMNLHDAKLGGFDIPAESKILVNAWWLANNPAHWKKPEEFRPERFLEEESHVEANGNDFRYLPFGVGRRSCPGIILALPILGITIGRLVQNFELLPPPGQSKIDTSEKGGQFSLHILKHSTIVAKPRSF*	506

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Mal8g1557	505	Pfam	Cytochrome P450	34	495	IPR001128	GO:0004497\|GO:0005506\|GO:0016705\|GO:0020037
	Mal8g1557	505	PANTHER	TRANS-CINNAMATE 4-MONOOXYGENASE	1	505	-	-
	Mal8g1557	505	PRINTS	E-class P450 group I signature	62	81	IPR002401	GO:0004497\|GO:0005506\|GO:0016705\|GO:0020037
	Mal8g1557	505	PRINTS	E-class P450 group I signature	295	312	IPR002401	GO:0004497\|GO:0005506\|GO:0016705\|GO:0020037
	Mal8g1557	505	PRINTS	E-class P450 group I signature	358	376	IPR002401	GO:0004497\|GO:0005506\|GO:0016705\|GO:0020037
	Mal8g1557	505	PRINTS	E-class P450 group I signature	86	107	IPR002401	GO:0004497\|GO:0005506\|GO:0016705\|GO:0020037
	Mal8g1557	505	PRINTS	E-class P450 group I signature	399	423	IPR002401	GO:0004497\|GO:0005506\|GO:0016705\|GO:0020037
	Mal8g1557	505	PRINTS	E-class P450 group I signature	181	199	IPR002401	GO:0004497\|GO:0005506\|GO:0016705\|GO:0020037
	Mal8g1557	505	PRINTS	E-class P450 group I signature	315	341	IPR002401	GO:0004497\|GO:0005506\|GO:0016705\|GO:0020037
	Mal8g1557	505	PRINTS	E-class P450 group I signature	437	447	IPR002401	GO:0004497\|GO:0005506\|GO:0016705\|GO:0020037
	Mal8g1557	505	PRINTS	E-class P450 group I signature	447	470	IPR002401	GO:0004497\|GO:0005506\|GO:0016705\|GO:0020037
	Mal8g1557	505	ProSitePatterns	Cytochrome P450 cysteine heme-iron ligand signature.	440	449	IPR017972	GO:0005506\|GO:0016705
	Mal8g1557	505	SUPERFAMILY	Cytochrome P450	34	503	IPR036396	GO:0004497\|GO:0005506\|GO:0016705\|GO:0020037
	Mal8g1557	505	PRINTS	P450 superfamily signature	306	323	IPR001128	GO:0004497\|GO:0005506\|GO:0016705\|GO:0020037
	Mal8g1557	505	PRINTS	P450 superfamily signature	359	370	IPR001128	GO:0004497\|GO:0005506\|GO:0016705\|GO:0020037
	Mal8g1557	505	PRINTS	P450 superfamily signature	438	447	IPR001128	GO:0004497\|GO:0005506\|GO:0016705\|GO:0020037
	Mal8g1557	505	PANTHER	TRANS-CINNAMATE 4-MONOOXYGENASE	1	505	-	-
	Mal8g1557	505	Gene3D	Cytochrome P450	20	497	IPR036396	GO:0004497\|GO:0005506\|GO:0016705\|GO:0020037

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Mal8g1557	Mal-Chr8	30391797	30395987	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Mal8g1557	1	504	Monolignol Biosynthesis Gene Families	AT2G30490	85.119	0.0	886

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Mal8g1557	K00487		-	pop:7464737	917.531

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Mal8g1557	8	30391797	30395987	Mal8g1557	8	30391797	30395987	ECH