Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal8g1550 ATGTCTCTACAGAAGCTCAAGCAACTAAAACTCTCAACACCAAGTTCAATTTTTGAAGACAACCCATCAATCAAAACAAAGAGAAAACCCAAAAGAAAGCTTGTTCGAGTCATAATCACAGACCACGACGCCACAGATTCCGATTCCTCCGGCGACGAAGAGAGAAAGAATAACAACCAAACAACAAAACGAAGAAAACCCAAGAGAGAAATCCTTCATATCAACATGCACCTTCCCGTACCCAATTCTTCTCTCTCATTTTCTTCTCCTTCATCTTATTCTTCACTTGCTTCGCCGGAGAAAACCAACAAAAAGTTCAAAAGAGTGAGTAGACCCAAAAACCCACCAACCTCCGCCGTCACGCGCCGCCACATTAAGTTCAGAGGAGTGAGACAACGGCCGTGGGGAAAATGGGCTGCTGAGATCCGTGACCCGACCCGAAGAAAACGTCTCTGGCTTGGAACATTCAGCACGGCGGAGGAAGCCGCCGTTGAGTATGACAGAGTTGCGGTGATGATACACGGTCCTAACGCCGTAACAAATTTTCCAATAACGCCGGTGAAGATGGAAACTGAAACTGAAGTGCTTACGGCGGTTAACGGTAGAAGTGACGGCGGAGGTGGTTACTCCGACGCTTTAGCATCCTCAACGTCTGTTTCAACTTGCGACGGCGGAGGTGGCTATACCGACGCTTTAGCGTCGCCAACGTCTGTTTTAACGTACGACTGTGATTCGACGCCGTTCGACGGTTTCCGTTACGTCGACGTGGACGCTTTTGGGTTTCACATCGACGCGCCGTTAAGTTTACCGGAAGTTAACGTTACGCTGACGTGTCATCAGAAGCTGGAAAAAGAAAAGTTTGAAGAGTTTGATCTTGACGAGTTTATGACGTGGCCGTACTGA 903 0.4795 MSLQKLKQLKLSTPSSIFEDNPSIKTKRKPKRKLVRVIITDHDATDSDSSGDEERKNNNQTTKRRKPKREILHINMHLPVPNSSLSFSSPSSYSSLASPEKTNKKFKRVSRPKNPPTSAVTRRHIKFRGVRQRPWGKWAAEIRDPTRRKRLWLGTFSTAEEAAVEYDRVAVMIHGPNAVTNFPITPVKMETETEVLTAVNGRSDGGGGYSDALASSTSVSTCDGGGGYTDALASPTSVLTYDCDSTPFDGFRYVDVDAFGFHIDAPLSLPEVNVTLTCHQKLEKEKFEEFDLDEFMTWPY* 301
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal8g1550 300 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR CRF5-RELATED 26 245 - -
Mal8g1550 300 MobiDBLite consensus disorder prediction 1 69 - -
Mal8g1550 300 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 26 245 - -
Mal8g1550 300 MobiDBLite consensus disorder prediction 36 60 - -
Mal8g1550 300 ProSiteProfiles AP2/ERF domain profile. 126 183 IPR001471 GO:0003700|GO:0006355
Mal8g1550 300 PIRSF PTI6 1 225 IPR017392 GO:0003700
Mal8g1550 300 PIRSF PTI6 223 300 IPR017392 GO:0003700
Mal8g1550 300 CDD AP2 126 185 IPR001471 GO:0003700|GO:0006355
Mal8g1550 300 SMART rav1_2 126 189 IPR001471 GO:0003700|GO:0006355
Mal8g1550 300 MobiDBLite consensus disorder prediction 1 21 - -
Mal8g1550 300 MobiDBLite consensus disorder prediction 83 120 - -
Mal8g1550 300 Gene3D AP2/ERF domain 125 185 IPR036955 GO:0003700|GO:0006355
Mal8g1550 300 Pfam AP2 domain 126 175 IPR001471 GO:0003700|GO:0006355
Mal8g1550 300 MobiDBLite consensus disorder prediction 83 100 - -
Mal8g1550 300 SUPERFAMILY DNA-binding domain 126 184 IPR016177 GO:0003677
Mal8g1550 300 PRINTS Ethylene responsive element binding protein signature 127 138 IPR001471 GO:0003700|GO:0006355
Mal8g1550 300 PRINTS Ethylene responsive element binding protein signature 149 165 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal8g1550 Mal-Chr8 30231620 30232522 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal8g1550 25 241 AP2-EREBP Transcription Factor Family AT4G27950 41.935 1.11e-35 129
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Mal8g1550 AP2 8.1e-12 CL0081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal8g1550 8 30231620 30232522 Mal8g1550 8 30231620 30232522 ECH
Mal2g3012 2 41864323 41865102 Mal8g1550 8 30231620 30232522 PCT