Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal8g1533 ATGCTCGCGGCTGCTTCGAGGAACGCCAGACCGTCCACCGGCGTCGGCAATCGTGTCCGGTCACTCTTAACTTCTTCCGGCATCACCACCGGCTACTCAGCTCCCACCACAAACGGTTTCCGTTACGGTTACAGTAACGGAATCAGTTACAGTAACCGCAACACAAGAACATGTCCAAGCTTGCTTTTCTCCATCAAAGGCTTTCTCTCCGATTCATCATCATCATCATCATCATCATCATCTTCATCTTCGTCACATGGAAAAAGTTTGAAGGTAGATGGAAGAGTGTTGTTTTCGACTTCAGCTAAAACTGATGATGGAAGTCAGAAGAATCAAAAAGTTGATCCTAATGTGGCTAAATCGCCTCCAAGTGGTGGACAAATTGCTGATATAAAGATCCTTAAATCGCTTGCTAGTTACCTTTGGATGAAAGATAATCCGGAATTTCGGTTTCGGGTTGTTACTGCATTGTTTTTACTTGTTGGAGCTAAGGTTGTGAATGTTCAGGTCCCTTTCTTATTCAAGCTAGCAGTTGATTGGTTGAATACTGCCACAGGAAATGCTGGCGCTGTTGCTGCAAGTCCTACTACAATGGCACTTTTTGCTACCCCCGCGGCAGTGTTAATTGGATATGGGATTGCACGTTCTGGAGCTTCTGCTTTCAATGAACTGCGGAATGCTTTGTTTTCTAAGGTAGCACTGCGAACAATTCGTTTAGTTTCAAGGAAGGTCTTTTCACATTTGCATGACCTTGACCTTCAATATCATCTAAGTCGAGAAACTGGTGCATTAAGTCGAATAATTGATCGTGGTAGCCGTGCAATAAATTTCATTCTCTCATCTATGGTGTTCAATGTAGTACCCACCATATTAGAGATATCTATGGTATCAGGTATACTGGCGTACAAATTTGGAGCACCTTTTGCATGGATTACATTCTTGTCAGTTGCTGCTTATGTTGTTTTTACACTTTCTATAACACAGTGGAGAACTAAATTCAGGAAAGCCATGAATAAGGCTGATAATGACGCTACTACTAGGGCTATTGATTCACTTATTAATTATGAGACGGTCAAATATTTCAATAATGAAGTTCATGAAACTGATCATTATGACAAGTACCTAAAGAGGTATGAGGATGCTGCTCTGAAAACCCAAAACAGTCTTGCTTTTTTGAACTTTGGTCAAAATGCTATATTTAGTACCGCTCTTTCAACAGCAATGGTTCTGTGTTCTCATGGGATCATGGATGGCACAATGACCGTTGGTGATTTGGTGATGGTAAATGGGCTTCTCTTTCAACTATCTCTTCCACTCAATTTCCTTGGCAGTGTTTATCGTGAAACTATACAAAGTCTTATTGACATGAAATCCATGTTCCAGTTACTCGAGGAAAAAGCAGACATTAAGGATAATGAAAATGCAAAGCCTCTAAGATTTAATGGGGGAAGGATCCAATTTGAGAACGTACATTTTAGTTACCTCACAGAAAGAAAGATACTAGATGGAATATCACTACTTGTGCCAGCTGGTAAAAGTGTTGCAATTGTTGGGACTAGTGGAAGTGGAAAATCAACCATTCTCAGAATGCTATTCAGATTTTTTGATCCACATTCTGGAAGTATAAAGATAGATGATCAAGATATTCGGGACGTAACCCTTGAGAGTTTACGGAAGTCTATTGGTGTTGTTCCACAAGATACTGTACTTTTCAATGATACTATATTTCATAACATTCACTATGGTCGGCTTTCAGCAACAGAAGAGGAGGTCCATGAAGCTTCTCGGAAAGCAGCAATCCATGACACTATCATGAGTTTTCCTGAGAAATACTCCACTGTTGTGGGAGAGCGAGGGCTAAAGTTAAGTGGTGGTGAGAAGCAACGTGTTGCCCTTGCTCGGGCATTCTTAAAAGCACCTGCAATACTGTTGTGTGATGAAGCTACAAGTGCTCTTGACAGCACAACAGAAGCAGAGATTTTAAGTGCATTGAAGTCAGTATCAAATAATCGAACTTCCATATTCATTGCTCACAGGCTCACCACTGCAATGCAGTGTGATGAGATCATTGTTTTGGAAAACGGAAAGGTGGTTGAGCATGGACCACACGAAGTTTTGTTAGCAAATGCAGGAAGATATGCACAGCTTTGGGGACAGCAAAATAACACTATTGATGCAATTGACACAGCCATCAAGTTGGGAGACTAA 2208 0.4112 MLAAASRNARPSTGVGNRVRSLLTSSGITTGYSAPTTNGFRYGYSNGISYSNRNTRTCPSLLFSIKGFLSDSSSSSSSSSSSSSSHGKSLKVDGRVLFSTSAKTDDGSQKNQKVDPNVAKSPPSGGQIADIKILKSLASYLWMKDNPEFRFRVVTALFLLVGAKVVNVQVPFLFKLAVDWLNTATGNAGAVAASPTTMALFATPAAVLIGYGIARSGASAFNELRNALFSKVALRTIRLVSRKVFSHLHDLDLQYHLSRETGALSRIIDRGSRAINFILSSMVFNVVPTILEISMVSGILAYKFGAPFAWITFLSVAAYVVFTLSITQWRTKFRKAMNKADNDATTRAIDSLINYETVKYFNNEVHETDHYDKYLKRYEDAALKTQNSLAFLNFGQNAIFSTALSTAMVLCSHGIMDGTMTVGDLVMVNGLLFQLSLPLNFLGSVYRETIQSLIDMKSMFQLLEEKADIKDNENAKPLRFNGGRIQFENVHFSYLTERKILDGISLLVPAGKSVAIVGTSGSGKSTILRMLFRFFDPHSGSIKIDDQDIRDVTLESLRKSIGVVPQDTVLFNDTIFHNIHYGRLSATEEEVHEASRKAAIHDTIMSFPEKYSTVVGERGLKLSGGEKQRVALARAFLKAPAILLCDEATSALDSTTEAEILSALKSVSNNRTSIFIAHRLTTAMQCDEIIVLENGKVVEHGPHEVLLANAGRYAQLWGQQNNTIDAIDTAIKLGD* 736
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal8g1533 735 Pfam ABC transporter 501 650 IPR003439 GO:0005524
Mal8g1533 735 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 474 720 IPR027417 -
Mal8g1533 735 ProSitePatterns ABC transporters family signature. 622 636 IPR017871 GO:0005524
Mal8g1533 735 MobiDBLite consensus disorder prediction 101 118 - -
Mal8g1533 735 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 154 451 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Mal8g1533 735 Gene3D - 477 731 IPR027417 -
Mal8g1533 735 PANTHER ATP-BINDING CASSETTE SUB-FAMILY B 88 725 IPR039421 -
Mal8g1533 735 SUPERFAMILY ABC transporter transmembrane region 148 468 IPR036640 GO:0005524|GO:0016021
Mal8g1533 735 CDD ABCC_ATM1_transporter 485 720 - -
Mal8g1533 735 SMART AAA_5 510 696 IPR003593 -
Mal8g1533 735 Pfam ABC transporter transmembrane region 155 438 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Mal8g1533 735 MobiDBLite consensus disorder prediction 101 124 - -
Mal8g1533 735 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 485 719 IPR003439 GO:0005524
Mal8g1533 735 Gene3D ABC transporter type 1, transmembrane domain 140 475 IPR036640 GO:0005524|GO:0016021
Mal8g1533 735 PANTHER BNAA10G12020D PROTEIN 88 725 - -
Mal8g1533 735 CDD ABC_6TM_ATM1_ABCB7 156 459 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal8g1533 Mal-Chr8 29696915 29710174 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal8g1533 321 721 Calmodulin-binding Proteins AT2G36910 35.437 1.90e-63 228