Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal8g1504 ATGGAGACATGCAACAAAGACAATGAAGAGATCGTTGATTCTGCAAAAGATGTTAGTAAGAATAGTTCCGTTAATGTGATTATTTCCAACCAAAAAGTGATCGATTGCTGCATTTGCCTTCAACCATTAACTATTCCCGTTTTTCAGTGTGACAAGGGTCATATTGTTTGCTCTACCTGCTGCTCTAAACTTATTAACGAGTGTCACAAGTGCTCATTGCCCATTAGCTCAAAACGTCGTAAAGTCATTGAGAATTTTTTGCAATCTACCCAAATGTCATGCCCAAACGAAAAATACGGCTGCAGTGAGACAATAAGTCATAGTGGGAAGAGGAAACATGAAGAAGAATGCATCTATGTGCCATGTTACTGTCCCCTTTCAGGTTGTGATTTTGTTGCTTCATTAGAAGTGTTGTCCAACCATTTCAACCATAAACACAGGGACTCTCTAATCGAATTTTCTTATGGTCTCTCCTTCAATGTCTCGTTGGATTCTAATGATGAAGCTATTGTTCTTCAAGAGGAAAATGATGGGAAACTATTTATTCTCAATAATAGTACTATGCTTCTGGGAAATGCAGTCAATATTAGCTGCATTGATCTCAACTCTTCTGAGGCCGCCGGGTATAGTTATGATATAATGGCTAGGTCTAAGATATCCAGTCTGAAGTTGCATTCTTCTCCGAAGAATGTCCAACGAGCTACTTTAGCAAGTCTTTCATCAGAGTTTCTCATGATTCCATTTGCTTATTTTGGTTCTTCTAAACCTCTCGAGCTAGAAATTTGCATAACCCCCAAGATGCAAATATTTATAGTACATTGCTGTGGAAAGATGACCCTGTTGAGGGTTGAAAGTTCCGACAAAATAGCCAATGTGAAGAAGAAGATTCTTCACAAGGAAATGATCCCAGTGCTCAAACAACTTCTGATATTTTCTGATAAGCTACTAGATGACAGCCAGACCCTTGCCAATTACAACATCCAAGAGAATTCAACCCTCCACCTCATCCTCCTCCACCCCTAG 1023 0.3939 METCNKDNEEIVDSAKDVSKNSSVNVIISNQKVIDCCICLQPLTIPVFQCDKGHIVCSTCCSKLINECHKCSLPISSKRRKVIENFLQSTQMSCPNEKYGCSETISHSGKRKHEEECIYVPCYCPLSGCDFVASLEVLSNHFNHKHRDSLIEFSYGLSFNVSLDSNDEAIVLQEENDGKLFILNNSTMLLGNAVNISCIDLNSSEAAGYSYDIMARSKISSLKLHSSPKNVQRATLASLSSEFLMIPFAYFGSSKPLELEICITPKMQIFIVHCCGKMTLLRVESSDKIANVKKKILHKEMIPVLKQLLIFSDKLLDDSQTLANYNIQENSTLHLILLHP* 341
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal8g1504 340 SUPERFAMILY Ubiquitin-like 245 337 IPR029071 -
Mal8g1504 340 SUPERFAMILY TRAF domain-like 92 263 - -
Mal8g1504 340 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 85 142 IPR013083 -
Mal8g1504 340 ProSiteProfiles Zinc finger SIAH-type profile. 89 147 IPR013010 GO:0008270
Mal8g1504 340 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SINA-LIKE 4 7 270 - -
Mal8g1504 340 Pfam Ubiquitin family 277 337 IPR000626 GO:0005515
Mal8g1504 340 Gene3D - 263 340 - -
Mal8g1504 340 ProSiteProfiles Ubiquitin domain profile. 267 340 IPR000626 GO:0005515
Mal8g1504 340 Pfam Seven in absentia protein family 82 236 IPR018121 GO:0005737|GO:0006511|GO:0007275
Mal8g1504 340 PRINTS Ubiquitin signature 277 297 IPR019956 -
Mal8g1504 340 PRINTS Ubiquitin signature 298 318 IPR019956 -
Mal8g1504 340 PRINTS Ubiquitin signature 319 340 IPR019956 -
Mal8g1504 340 SMART ubq_7 267 338 IPR000626 GO:0005515
Mal8g1504 340 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SINA-LIKE 4 7 270 IPR044286 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal8g1504 Mal-Chr8 28916195 28918530 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal8g1504 267 337 Cytoplasmic Ribosomal Protein Gene Family AT3G62250 59.155 3.61e-19 81.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal8g1504 K04506 - gmx:100778869 234.958