Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal8g1502 ATGGAGACATGCAACCAAGAAAGTGAAGAGATGGTTGATTCCTCAAAAGATGTTAGTAAGAATAGTTCAGTTAATGTGATGATTTCCAACCAAAAAGTGTTCGATTGCTGCATTTGTCTTCAACCATTGAGTATTCCCGTCTTTCAGTGTGATAATGGTCACATAGTTTGCTCTACCTGCTGTCCTAAGCTTATTAACAAGTGTCCCAAGTGCTCATTGCCCATTAGCTCAAAGCATTGTATCCAGATGTCATGCCCGAACGAAAAATATGGCTGCAGGGAGACGATAAGTCACAGTGGAAAGAGGAAACATGAAGAAGAATGCATCTATGTACCATGTTACTGTCCCCTTTCAGGTTGTGATTTTGTTGCTTCATTAGAAGTGTTGTCCAACCATTTCAACCATAAACACGGGGACTCTCTAATCGAATTTTCTTATGGTCACTCTTTCATTGTCTCGTTGGATTCTAATGATGAAGCTATTGTTCTTCAAGAGGAAAATGATGGGAAACTATTTATTCTCAATAATAATACTATGCTTCTGGGAAATGCAGTCAATATTAGCTGCATTGATGTCAACTCTTCTGAGGCCGGGTATAGTTATGACATATTGACTAGGTCTAAGATATCTAGTCTGAAGTTTCATTCTTCTCCGAAGAATGTCCGACGGGCTACTTTAGCAAGTCTTTCATCAGAGTTTCTCATGATTCCATTTGGTTATTTTGGTTCTTCTAAACCTCTTGAGCTAGAAATTTGCATAACCCCCAAGATGCAAATATTCATAGCGCATTGTTGTGGAAAGATGACCCCCTTGAGGGTTGAGAATTCAGACACGATAGCCAATGTGAAGGAGAAGATTCTTGACAAGGAAATGATCCCGGTGCTCAAACAACTTCTGATATTTTCTGATAAGCCACTAGATGACATCCAGACCCTTGCCAATTGCAACATCCAAGAGAATTCAACCCTCCACCTCATCCTCCGCCACCCCTAG 993 0.4038 METCNQESEEMVDSSKDVSKNSSVNVMISNQKVFDCCICLQPLSIPVFQCDNGHIVCSTCCPKLINKCPKCSLPISSKHCIQMSCPNEKYGCRETISHSGKRKHEEECIYVPCYCPLSGCDFVASLEVLSNHFNHKHGDSLIEFSYGHSFIVSLDSNDEAIVLQEENDGKLFILNNNTMLLGNAVNISCIDVNSSEAGYSYDILTRSKISSLKFHSSPKNVRRATLASLSSEFLMIPFGYFGSSKPLELEICITPKMQIFIAHCCGKMTPLRVENSDTIANVKEKILDKEMIPVLKQLLIFSDKPLDDIQTLANCNIQENSTLHLILRHP* 331
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal8g1502 330 Pfam Ubiquitin family 262 328 IPR000626 GO:0005515
Mal8g1502 330 ProSiteProfiles Zinc finger SIAH-type profile. 80 138 IPR013010 GO:0008270
Mal8g1502 330 PRINTS Ubiquitin signature 288 308 IPR019956 -
Mal8g1502 330 PRINTS Ubiquitin signature 267 287 IPR019956 -
Mal8g1502 330 PRINTS Ubiquitin signature 309 330 IPR019956 -
Mal8g1502 330 SUPERFAMILY Ubiquitin-like 239 329 IPR029071 -
Mal8g1502 330 Gene3D - 254 329 - -
Mal8g1502 330 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SINA-LIKE 4 6 260 IPR044286 -
Mal8g1502 330 SUPERFAMILY TRAF domain-like 82 239 - -
Mal8g1502 330 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 77 133 IPR013083 -
Mal8g1502 330 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SINA-LIKE 4 6 260 - -
Mal8g1502 330 ProSiteProfiles Ubiquitin domain profile. 257 330 IPR000626 GO:0005515
Mal8g1502 330 Pfam Seven in absentia protein family 81 225 IPR018121 GO:0005737|GO:0006511|GO:0007275
Mal8g1502 330 SMART ubq_7 257 328 IPR000626 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal8g1502 Mal-Chr8 28875351 28877448 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal8g1502 257 328 Cytoplasmic Ribosomal Protein Gene Family AT3G62250 59.722 3.57e-20 84.0