Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal8g1492 ATGGAAAATTCAGATCACAGCGAACCCGACAAGAAGAAACCGCATCTTCTCACACCAGTTTCTTCCCGCGTGTCACGAAACTCATCCAATCATTCTCCTAACAGTAAAAATGCTGATGCAGGTGTCTTACAGCTCCAGAATCAGCAGCTTGTTCAGCAGACAGAAGTCCAGAAACAGGCTATACAGGATCTTGAAGAAAAAACTAGAGAATTAAAAGAAAGACAAAATTCATACGATGACACATTAATTGCAATCAACCAACACTGGGATCAGTTGGTTGATGATATGGCTCTTCTCGGGATACAAGCTGGGAGAAGCAAAGATTCTTTGGAAACTTTGGATTACCTTGATAATCCTCAAGGTTCCCTTCCTTTGTGTCCTCCGGATGATCTACTTCTATGTAGATTAATCCAGAAAGATTCTATTGAGGGAAACATTAATGATGAGATTACTAATTTTGTTGAGGAAGCCCTTGCTTTGCGTCGCTTATCTACTAGGGAGTTGTTGAAACTCAGTCAAGATACTGTTGATGATCAGATGGAAAGAATTGAGGATATAGGTCAGGTTTTACATGAAGATTTATCCACGGAAGATGTTATCTTCGAAATGTCTAAGATTGATGATATGACGAAAAAGGAGGTTGACAATTTTCGTGAAGTGATTGATACCCTCCATGCAAAACACAAAGAGTATACTGTTGGTATTCAGAATTATATAAATGAGTGCTCACAAGATCAATCTGACATAAAACGCCTTACAGGAGAGTTTGACGAGATCGTGGCTGAACTTGAAGAGAGTAGAAGAAAACTAGTCAGTCTGAAAATGCAAAAGGATGCAGCTATGGGAATGAATTCCTCAAATGCTGATGCAGTGAATGGAAACTTATCTCCTGAGAAGCCTGCAGACAGAGTCATGGGTTTGTCCGAGTTGAAGAATTCAATTGAGGAAGCCAAGATTGTGAATGCTGATAGTCTTTCTGAGCTTCAAAATGCACAGGAAGGAAATCAAATATTGACAAAGCAATTCCAAGAACTCCAGAATGAACTAAATGATGATAAGTATGCACGTACTTCCCGAGTATACTCTTTGGCAAATGATCAACTTCAACATTGGATCTCTGAATTGGATAGATATAAATCGTTGACAGAGTCTCTGCAGGCTGGCAGGGTTAACGTCGCAAAACGGGAGAAGGAATTGAATTTGAAAATGGAGTCTGCTGTTAATGCAAGGAATATCCATGGCAATTCTGACTCTAGGACTGATGAGCTCAAGATTCAGTTGCAAAAGTGTATTATTGAAAGGAATGATCTTGAAATCAAGATGGAAGAGGCTAAACAGGATACTGGGAGAAAAGATATCAAAGCTGAGTTTCATGTAATGTCGTCAGCTTTATCTAAAGAAATGGGGATGATGGAAACACAGTTGAAGCGATGGAAAGACGCAGCTCTTGAAGCTGTATCATTGCGCGAGAAAGCACATTCACTAAGAGCGAAATTGAGTGGGAAGACAAGTGAACTCAAGAGCCTTGCAAACAAATGTGCTGAACAGGTTTTGGAAATAAAGTCTTCAAAAGCACTGATTGAAAAGTTACAGGAGGAGAATCAGGAGTTAGAATTTGTTCTGGATATGTATGGCCTGGAGGATTATCAGAAAAGCTTGCCAGAAGTTAGAGAATCTGAAAATAAAGCTCGCTCTCAAGCTGAAATGCTGAAAAATGCTTTAGATGAACATGGTCTAGAGTTGAGAGTAAGAGCTGCTAATGAGTCTGAAGCTGCTTGTGAACAAAGGCTTTCTGCCGCAGAAGCTGAAATAGAGGAGTTAAGGGCCCAGCTTGATGCAACTGAAAGAAAAAAATTGGAGATGAAAGAGGCTATTAAAGTTAAAGAGGCTGAGGCAGAAACCTATATATCTGAAATCGAGACTATTGGTCAAGCATATGAAGATATGCAAACACAGCACCAACATCTGTTGCAGCAAGTGGCTGAGAGGGATGACTATAATATCAAGCTTGTATCAGAAAGCGTGAAGGCAAAACTTTTACATAGCACTTTACTGTCTGAAAAGCAAGCCTTAGCTGATCAACTTCAACAGATTAATTCTTTGATAGAAAATTCACAGAAGAAGATTGCAAATAGTGAAGAACAGATTGAATGCATTCTATCAAAAGCCGCCAAATGTACTCAAGATGAAAAACACCTTGCAGCCGCCTTAGAGTTTGCCAGGTGGGAATTGGTTGATGCTGAGAAGGAGTTGAAGTTGCTCAAATCTGTTGCTTCAGCTTCAGAGAAAGAGTACGACCAAATTCTGAAAGATGTGGAAACTTTTGAAAAGGAATTGGAGAGTGAAAGGAGTTCACGGAAGAAGCTTGAGGAAGAACTAATGGAAGTGAACAACCAAATTGCTGAGCTGAATTTTGAAGCCAGAGAAACTAAAGTGCAACAACTTGAAGATGAAATAAGAGTTTGTAAGAACATGATCAAGTGTACTGTCTGTTCTGACCGTCCAAAGGAGGTTGTGATTGCGAAGTGCTATCATCTGTTCTGCAATCCATGTATACAAAGAAATCTTGAGCTCCGTCACCGCAAATGCCCTGCCTGCGGAACAGCATTTGGACAGAACGATGTTCACTCTGTTAAAATATGA 2643 0.3992 MENSDHSEPDKKKPHLLTPVSSRVSRNSSNHSPNSKNADAGVLQLQNQQLVQQTEVQKQAIQDLEEKTRELKERQNSYDDTLIAINQHWDQLVDDMALLGIQAGRSKDSLETLDYLDNPQGSLPLCPPDDLLLCRLIQKDSIEGNINDEITNFVEEALALRRLSTRELLKLSQDTVDDQMERIEDIGQVLHEDLSTEDVIFEMSKIDDMTKKEVDNFREVIDTLHAKHKEYTVGIQNYINECSQDQSDIKRLTGEFDEIVAELEESRRKLVSLKMQKDAAMGMNSSNADAVNGNLSPEKPADRVMGLSELKNSIEEAKIVNADSLSELQNAQEGNQILTKQFQELQNELNDDKYARTSRVYSLANDQLQHWISELDRYKSLTESLQAGRVNVAKREKELNLKMESAVNARNIHGNSDSRTDELKIQLQKCIIERNDLEIKMEEAKQDTGRKDIKAEFHVMSSALSKEMGMMETQLKRWKDAALEAVSLREKAHSLRAKLSGKTSELKSLANKCAEQVLEIKSSKALIEKLQEENQELEFVLDMYGLEDYQKSLPEVRESENKARSQAEMLKNALDEHGLELRVRAANESEAACEQRLSAAEAEIEELRAQLDATERKKLEMKEAIKVKEAEAETYISEIETIGQAYEDMQTQHQHLLQQVAERDDYNIKLVSESVKAKLLHSTLLSEKQALADQLQQINSLIENSQKKIANSEEQIECILSKAAKCTQDEKHLAAALEFARWELVDAEKELKLLKSVASASEKEYDQILKDVETFEKELESERSSRKKLEEELMEVNNQIAELNFEARETKVQQLEDEIRVCKNMIKCTVCSDRPKEVVIAKCYHLFCNPCIQRNLELRHRKCPACGTAFGQNDVHSVKI* 881
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal8g1492 880 Coils Coil 427 447 - -
Mal8g1492 880 ProSiteProfiles Zinc finger RING-type profile. 828 866 IPR001841 -
Mal8g1492 880 Coils Coil 556 576 - -
Mal8g1492 880 Coils Coil 249 276 - -
Mal8g1492 880 Coils Coil 47 81 - -
Mal8g1492 880 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 808 880 IPR013083 -
Mal8g1492 880 ProSitePatterns Zinc finger RING-type signature. 843 852 IPR017907 -
Mal8g1492 880 MobiDBLite consensus disorder prediction 1 38 - -
Mal8g1492 880 PANTHER E3 UBIQUITIN-PROTEIN LIGASE BRE1 22 880 - -
Mal8g1492 880 CDD RING-HC_BRE1_like 826 867 - -
Mal8g1492 880 PANTHER RING FINGER PROTEIN-RELATED 22 880 IPR013956 GO:0004842|GO:0010390
Mal8g1492 880 Pfam Zinc finger, C3HC4 type (RING finger) 827 868 - -
Mal8g1492 880 SUPERFAMILY RING/U-box 827 872 - -
Mal8g1492 880 Coils Coil 583 631 - -
Mal8g1492 880 MobiDBLite consensus disorder prediction 20 38 - -
Mal8g1492 880 Coils Coil 688 722 - -
Mal8g1492 880 Coils Coil 513 547 - -
Mal8g1492 880 MobiDBLite consensus disorder prediction 1 17 - -
Mal8g1492 880 SMART ring_2 828 866 IPR001841 -
Mal8g1492 880 Coils Coil 328 348 - -
Mal8g1492 880 Coils Coil 737 818 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal8g1492 Mal-Chr8 28680889 28695467 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal8g1492 828 876 RAD5 or RAD16-like Gene Family AT5G05130 32.653 5.98e-07 51.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal8g1492 K10696 - gmx:100796610 1249.57