Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal8g1490 ATGGAACAGGAACAGGAACAAGGAAGCTTTGAAAGCTTCTTAACATGGACATCACACCTCGGAATATCAGATTCAACAACAACAACCACCGACCAATCTCAACACTCTCTTTCCTCTCTTGGTCGTTCTCTCTGCGTTTCTATCTTTCCTCACTCTGGCGGTAGAGGTTTGGGTGCTGTGAGAGATCTTAAGAGGGGAGAACTTATTCTAAGAGTTCCAAAATCTGCTTTATTGACTAGTGAGAGTGTTATTATGGAAGATAAGAAGCTATGTCTTGCTGTCAATAGGCATTCTTCTCTCTCCTCTGTTCAGATATTGACTGTTTGCTTGTTATACGAAGTCGGTAAAGGAAAGACTTCAAGGTGGCATCCTTACCTCGTTCATTTGCCGCAAAGTTACGACTTGCTAGCCATGTTTGGTGAATTTGAGAAACAAGCCCTGCAAGTGGATGAAGCTATGTGGGTCACAGAAAAAGCTGTACAAAAAGCGAAATCAGAATGGAAAGAAGCTCATGCCTTGATGGAAGATCTCACGTTCAAGCCTCAGTTTTTAACATTTAAGGCTTGGGTTTGGGCTGCTGCAACAATATCTTCCCGGACATTGCACATACCGTGGGATGAAGCTGGTTGTTTATGCCCTGTTGGTGACTTGTTTAATTATGATGCACCTGGAGAGGACCTATCTGGTATTGAGAATGTAACTAGTACTACCTTATCAAATGGAGACAATAATGAAGTTGGAGACGAAGAGCAGATTGATTTTAATTCTCAGAGACTAACTGATGGTGGGTTTGAAGATGATGCTAATGCATATTGCTTTTATGCTAGGACAAATTACAAGAAAGGTGATCAGGTTCTATTATGCTATGGAACATACACAAATTTGGAGCTTCTTGAACACTATGGATTTCTCTTGCAAGAAAACCCAAATGACAAAATTTTCATTCCTTTGGAACCTGCTATGTACACTTCTACTTCATGGTCTAAAGAATCACTCTTTATCCATCCCAACGGAAAACCTTCGTATGCGCTACTAGCTGCGTTACGATTGTGGGCAACCCCTCATAATAAGAGGAGGTCTGTTGGACATCTGGCGTATTCTGGTTCTCAACTTTCTGCCGACAATGAAATTGTCGTTATGAAATGGTTGTCGAAAACTTGTGACACTGTCTTAAAGAATATGCCAACATCTATTGAAGATGACACCTTACTCTTGAATGCATTGGATTGTATTCAAGACTGTATAACTTTCATGAAGATTGTTAAACTTATGTCTTCCAGAGATGAAGTTTATACATTCTTAGAAGCTCATAATATAACGGACGCACTTAGTTTTTGTGATATAATTTCATCTAAAAAAACAAGAAGGTCAATGGATAGGTGGAAATTAGCTGTCTCATGGAGGCTCAGGTATAAGAGAGTCCTTGTTGATTGTATCTCTTATTGCAATGGAATACTGGAATCTTTCATGAAATGA 1476 0.3963 MEQEQEQGSFESFLTWTSHLGISDSTTTTTDQSQHSLSSLGRSLCVSIFPHSGGRGLGAVRDLKRGELILRVPKSALLTSESVIMEDKKLCLAVNRHSSLSSVQILTVCLLYEVGKGKTSRWHPYLVHLPQSYDLLAMFGEFEKQALQVDEAMWVTEKAVQKAKSEWKEAHALMEDLTFKPQFLTFKAWVWAAATISSRTLHIPWDEAGCLCPVGDLFNYDAPGEDLSGIENVTSTTLSNGDNNEVGDEEQIDFNSQRLTDGGFEDDANAYCFYARTNYKKGDQVLLCYGTYTNLELLEHYGFLLQENPNDKIFIPLEPAMYTSTSWSKESLFIHPNGKPSYALLAALRLWATPHNKRRSVGHLAYSGSQLSADNEIVVMKWLSKTCDTVLKNMPTSIEDDTLLLNALDCIQDCITFMKIVKLMSSRDEVYTFLEAHNITDALSFCDIISSKKTRRSMDRWKLAVSWRLRYKRVLVDCISYCNGILESFMK* 492
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal8g1490 491 Pfam SET domain 54 290 IPR001214 GO:0005515
Mal8g1490 491 SUPERFAMILY SET domain 47 308 IPR046341 -
Mal8g1490 491 Pfam Rubisco LSMT substrate-binding 339 475 IPR015353 -
Mal8g1490 491 CDD SET_LSMT 53 304 - -
Mal8g1490 491 PANTHER UNCHARACTERIZED PUTATIVE METHYLTRANSFERASE 6 476 - -
Mal8g1490 491 Gene3D set domain protein methyltransferase, domain 1 7 304 - -
Mal8g1490 491 ProSiteProfiles SET domain profile. 42 290 IPR001214 GO:0005515
Mal8g1490 491 Gene3D - 317 490 IPR036464 -
Mal8g1490 491 SUPERFAMILY RuBisCo LSMT C-terminal, substrate-binding domain 300 407 IPR036464 -
Mal8g1490 491 PANTHER PROTEIN SET DOMAIN GROUP 40 6 476 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal8g1490 Mal-Chr8 28610347 28614551 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal8g1490 54 332 NAC Transcription Factor Family AT3G56570 22.849 1.77e-07 51.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Mal8g1490 SET 1.4e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal8g1490 - - gmx:100787452 775.007