Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal8g1489 ATGGAGGCAAGTACCGAAGATTGTGAAGAGACCGTTGATTCCTCAGAAGATGTTAATGAGGAAAATTCTGTTTCTGTGATGATTTCCAATCCAAATGCATTTGATTGCTCCATTTGTTTTCAACCCTTGAGTATCCCCGTGTTCCAGTGTGTTAATGGCCATTTTGTTTGCTCTACTTGCTGTGATAAATATTGGAACAAGTGTCAGAAGTGCTCAAAATGCATTAGCTTAAAACGTTGTAGAGCCATTGAGAATCTAATGCAATCATTCGAAATGTCATGCTCGAATGAAAAATATGGATGCAAGGAGACAATGTCTTACAATGAGAAGAGGAAGCATGAAGAAGAATGTATGTATGTGCCATGTTACTTGTTGCCCAACCATTTCAGCCATAAACACAAGGATTCTCCGATCAATTTTTCTTATGGTCACTCCTTCATTGTCTCCTTAAAGTCTTATGATGAAACCATTGTCCTTCAAGAGGAATGTGTCGGCAAACTGTTTATTCTCAATAATAGTATAATGAAACTGGGAAATGCGGTCAATATTAGCTTCATTGGTCCTAACTATTCTGAGCCACGGTATCATTATGATATATTGGCTCAGTCTCAAACATGCAGTTTGAAGTTAGTCTTTTCCGAAGAGTGTCCAGCGTGTTACTTTAGCAGCTCTTTCGTCGACATGCAAATCTTCATAGAAACTCTGACCGGAAAGATGATCCCCCTGAAGGTGGAGAGTTCATACACGATAGCCAATGTGAAGGAGAAGATTCGATACAAGGAAAAAATCCCAGTGGACCAACAACGTCTGATCTTTGCCAATAAGGAACTGGCTGACTTCCAGACCCTTGCCAATTACAAGATCCAAGAGAAGTCAACCCTCAATCTCATCCTCCGCTTCGGTTCCAGACCCTTACCATAA 921 0.4039 MEASTEDCEETVDSSEDVNEENSVSVMISNPNAFDCSICFQPLSIPVFQCVNGHFVCSTCCDKYWNKCQKCSKCISLKRCRAIENLMQSFEMSCSNEKYGCKETMSYNEKRKHEEECMYVPCYLLPNHFSHKHKDSPINFSYGHSFIVSLKSYDETIVLQEECVGKLFILNNSIMKLGNAVNISFIGPNYSEPRYHYDILAQSQTCSLKLVFSEECPACYFSSSFVDMQIFIETLTGKMIPLKVESSYTIANVKEKIRYKEKIPVDQQRLIFANKELADFQTLANYKIQEKSTLNLILRFGSRPLP* 307
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal8g1489 306 SUPERFAMILY Ubiquitin-like 220 300 IPR029071 -
Mal8g1489 306 Gene3D - 223 304 - -
Mal8g1489 306 SUPERFAMILY TRAF domain-like 93 204 - -
Mal8g1489 306 PRINTS Ubiquitin signature 238 258 IPR019956 -
Mal8g1489 306 PRINTS Ubiquitin signature 280 301 IPR019956 -
Mal8g1489 306 PRINTS Ubiquitin signature 259 279 IPR019956 -
Mal8g1489 306 SMART ubq_7 228 299 IPR000626 GO:0005515
Mal8g1489 306 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SINA-LIKE 4 5 221 IPR044286 -
Mal8g1489 306 Pfam Ubiquitin family 230 299 IPR000626 GO:0005515
Mal8g1489 306 ProSiteProfiles Zinc finger SIAH-type profile. 89 134 IPR013010 GO:0008270
Mal8g1489 306 MobiDBLite consensus disorder prediction 1 21 - -
Mal8g1489 306 ProSiteProfiles Ubiquitin domain profile. 228 299 IPR000626 GO:0005515
Mal8g1489 306 MobiDBLite consensus disorder prediction 1 17 - -
Mal8g1489 306 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SINA-LIKE 4 5 221 - -
Mal8g1489 306 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 84 135 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal8g1489 Mal-Chr8 28600632 28602391 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal8g1489 228 300 Cytoplasmic Ribosomal Protein Gene Family AT1G23410 67.123 8.81e-26 98.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal8g1489 K04506 - csin:114308989 188.734