Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal8g1484 ATGTGTTGTCTATTTCTGGAGGCACACTGGCAATACGTACCGGGTTATATTTCCTGGTTTTGTAGGGTATCTCAGGCCAAATTAGTGTCTATAGTCGAGGAGATCCTGTCTAGGCCATCAAATGTGGAGGTTCTGATAGAGGAGGAACATTTTTTTAATCATTATTTGTCAAAAGGTGCAATGGAGCCTGTTGATTCTTCCTCAAAAGATGTTAGCAAGAAGAATAAGCCCGTTCCTCTGATGATTTCCAACCCTAAATTGCTTGATTGCCTCATTTGCTTTCAACCCTTGAGTATTCCAGTCTTACAGTGTGATAATGGCCATATTGTTTGCTCTACATGCATTCCTAAAACTAGGATCATGTGTCACAAGTGCTTATTGCCCATTAACTCAAAACGGTGTAAAACCATTGAGAATCTATTGCTATCTACTCAAATGCCATGTCCGAATGAAAAACATGGTTGCAGGGAGAAAATAAGTTACACTCAAAAGAGGAAGCATGAAGAAGAATGCATCCATGGGAAATGTTACTGCCCCCTTTCAGGTTGTGACTTTGTTGCATCATCAAAAGTGTTGTCTAAGCATTTCAGCTATAAACACGAGGATTCTCAAATAAAATTTTCTTACGGTCACTCCTTCGTTGTCTCCTTGAAGTCTACTGATGAAACTATTGTTCTTCAAGAGGAAATTGATGGCAAACTATTTATTCTCAATAATAGTGCTATGCTTTTGGGAAATGCAGTTAATATTTATGGCATTGGTCCAAATTCTTCTGAGTCCGAGTATAGTTATGATATATTGGCTAGGTCTCAGATATGCAAACTGAAATTACAGTCTTTTGCGAAGGATGTCCAACGGGTTACTTTAGCACCTCTTTCTTCAGAGTTCCTTGTGATTCCATTTGGTTCTTCTAAACCTCCCAAGCTAGAAATTTGCATAACTTGTATAACCCCAAAGATGATAATATTCATAATGTTCATGAAAAGAAAGACATTCCGCCTGAGGGTTCAGAGTTCAGACACGATAGTAAGTGTGAAGGAGAAAATTTTTGACATAGAAGATATCCCAGTGCACCAACAACATATGACATTTGCTTGTAAGAAACTAGATGACAGTCAGACCCTTTCCGATTACAACATCCTAGAGAATTCAACCATCGATTGTATCCTCCGCTTCACTGGGAACTAG 1188 0.3872 MCCLFLEAHWQYVPGYISWFCRVSQAKLVSIVEEILSRPSNVEVLIEEEHFFNHYLSKGAMEPVDSSSKDVSKKNKPVPLMISNPKLLDCLICFQPLSIPVLQCDNGHIVCSTCIPKTRIMCHKCLLPINSKRCKTIENLLLSTQMPCPNEKHGCREKISYTQKRKHEEECIHGKCYCPLSGCDFVASSKVLSKHFSYKHEDSQIKFSYGHSFVVSLKSTDETIVLQEEIDGKLFILNNSAMLLGNAVNIYGIGPNSSESEYSYDILARSQICKLKLQSFAKDVQRVTLAPLSSEFLVIPFGSSKPPKLEICITCITPKMIIFIMFMKRKTFRLRVQSSDTIVSVKEKIFDIEDIPVHQQHMTFACKKLDDSQTLSDYNILENSTIDCILRFTGN* 396
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal8g1484 395 Pfam Ubiquitin family 322 391 IPR000626 GO:0005515
Mal8g1484 395 ProSiteProfiles Ubiquitin domain profile. 320 395 IPR000626 GO:0005515
Mal8g1484 395 SUPERFAMILY TRAF domain-like 145 301 - -
Mal8g1484 395 PRINTS Ubiquitin signature 351 371 IPR019956 -
Mal8g1484 395 PRINTS Ubiquitin signature 330 350 IPR019956 -
Mal8g1484 395 PRINTS Ubiquitin signature 372 393 IPR019956 -
Mal8g1484 395 ProSiteProfiles Zinc finger SIAH-type profile. 143 201 IPR013010 GO:0008270
Mal8g1484 395 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SINA-LIKE 4 67 316 IPR044286 -
Mal8g1484 395 Gene3D - 316 395 - -
Mal8g1484 395 SMART ubq_7 320 391 IPR000626 GO:0005515
Mal8g1484 395 Pfam Seven in absentia protein family 133 286 IPR018121 GO:0005737|GO:0006511|GO:0007275
Mal8g1484 395 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 139 196 IPR013083 -
Mal8g1484 395 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SINA-LIKE 4 67 316 - -
Mal8g1484 395 SUPERFAMILY Ubiquitin-like 314 394 IPR029071 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal8g1484 Mal-Chr8 28477738 28481399 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal8g1484 320 395 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 50.000 7.40e-17 74.7