Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal8g1478 ATGGAGCCTCTGAATATTTCCAACCCTAAATTGCTTGATTGCTGCAATTGTTTTCAACCCTTAACTATTTCCGTCTTTCAGTGTGATAATGGCCATATTTGCTCTACCTGCTGTCCTAAACTTAGGAACAAGTGTCACGAGTGCTTGTTGCCCATTAGCTCAAAACATTGTAAATCCATTGAGAATCTATTGCAATCTATCAAAGTTTCATGCCCGAATGTAAAACATGGTTGCAGGGAGAAAATAAGTTACACTCGAAAGAGGAAGCATGAAGAAGAATGCACATATGGGGAATGTTACTGCCCACTTTCAGGTTGTGACTTTGTTGCATCATCAGAAGGATTCTCAAATCAAATTTCTTATGGTCACTCCTTCATTGTCTCGTTGATGTCTAAAGATGAAACCATTGTTCTTCAAGAGGAAAATGATGGGAAACTATTTATTCTCAATAATAGTACTATGCTTCTGGGAAATGCAGTCAATATTTGCTGCATTGGATCTAACTCTTCTGCGTCCGAGTATAGTTATGATATATTGGCTTGGTCTCAAATATGCAAACTAAGATTACAATCTTTTGCGAAGAACGTCCAACGGGTTTCTTCAGCCACTCTTTCATCAGGGTTTCTTGTGATTCCAATTGGTTCTTCTGAACCTCTCAAGCTAGATATTTGCATAACCCCCATGATGCAAATCTATATAGTGACACTGACCGGAAAGATGATCCCCTTGAGGGTTGAGAGTTCAGACACGATAGTCAATGTGAAGAAGAAGATTCTTGACAAAAAAGGGATCCCAGTGCACAAGCAACTTCTATACTTTGATGGTAAGCAACTAGAGGTCAACCTGACCCTTGCCAATTACAACATCCAAGAGAAGTCAACCATCGACCTCATCCTCCGCCTTACTGGGAGCTAG 915 0.4011 MEPLNISNPKLLDCCNCFQPLTISVFQCDNGHICSTCCPKLRNKCHECLLPISSKHCKSIENLLQSIKVSCPNVKHGCREKISYTRKRKHEEECTYGECYCPLSGCDFVASSEGFSNQISYGHSFIVSLMSKDETIVLQEENDGKLFILNNSTMLLGNAVNICCIGSNSSASEYSYDILAWSQICKLRLQSFAKNVQRVSSATLSSGFLVIPIGSSEPLKLDICITPMMQIYIVTLTGKMIPLRVESSDTIVNVKKKILDKKGIPVHKQLLYFDGKQLEVNLTLANYNIQEKSTIDLILRLTGS* 305
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal8g1478 304 PRINTS Ubiquitin signature 281 302 IPR019956 -
Mal8g1478 304 PRINTS Ubiquitin signature 260 280 IPR019956 -
Mal8g1478 304 PRINTS Ubiquitin signature 239 259 IPR019956 -
Mal8g1478 304 ProSiteProfiles Zinc finger SIAH-type profile. 66 124 IPR013010 GO:0008270
Mal8g1478 304 Pfam Ubiquitin family 231 301 IPR000626 GO:0005515
Mal8g1478 304 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SINA-LIKE 4 6 229 - -
Mal8g1478 304 ProSiteProfiles Ubiquitin domain profile. 229 304 IPR000626 GO:0005515
Mal8g1478 304 Gene3D - 225 304 - -
Mal8g1478 304 SMART ubq_7 229 300 IPR000626 GO:0005515
Mal8g1478 304 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 61 117 IPR013083 -
Mal8g1478 304 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SINA-LIKE 4 6 229 IPR044286 -
Mal8g1478 304 SUPERFAMILY TRAF domain-like 66 226 - -
Mal8g1478 304 SUPERFAMILY Ubiquitin-like 212 303 IPR029071 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal8g1478 Mal-Chr8 28300944 28303532 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal8g1478 229 304 Cytoplasmic Ribosomal Protein Gene Family AT1G23410 64.474 1.05e-24 95.9