Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal8g1476 ATGGAGCCATTCACCAAAGACTCACCTCTTGATTCCTCAAAAGATCATGTTAATAACAATAGCACCCTTAGTCTTACTTTTTCTGATCCACATGCATTTGATTGCTGCATTTGCTTTGAAACCTTGAGTATTCCCGTGTTTCAGTGTGATAATGGTCATATTGTTTGCTCTACCTGTTGTCGTAAGCTTAATATGAAGTGTCACAATTGCTCGAAGCACGTTACCTTGAAACGTTGTATAGCATTTGACAATCTGTTGCGATCTCTCGGAAAACCATGCCCAAATGAAAAATATGGTTGCAGGGAGACAATAAGTTACGGTGGAAATAAGCATAATGAAGTATGCATCTATGTGCCATGTTACTGCCTCGTATCAGGTTGTGACTTTGTTGCCTCATCTGAAGTGTTGTCCAACCATTTCAGCCAGAAACATGGGGATTCTATAAACAAATTTTCTTATCGTAAGTCCTTCATTGTCTCCTTGAAGTCGGATGACGAAATTGTTGTTCTTCAAGACAAAAATGATGGGAAACTATTTATTCTTCATAATAGTCCTATGGTTATGGGAAATGCAATCAATGTTAGTTGCATTGGTCCTAAGTATTCTAAGGCTAGGTATAGTTATAGTATATTGGCTCGATCCAAAATATGCAAACTGAAATTACAGTCTTTTGCAAAGAACGTCCAACGAGTTACTTTAGCAACTCTTCAGTCAGAGTTCCTTATGATTCCCTGTGGTTCTTCTGAACCTTTAAAGCTAAAAATTTGCATAACCCCCATGGTGAAAATGCATATCTTTGTAAAACTTCCAATTGGAAACACAATCGACCTGATGGTTGAGAGTTCAGACACGATAGTCAATGTGAAGGAGAAGATTCTCGACAAGGAAGAGGTCCCAGTGCCCATACAACGTCTGATATTTGCCGGTAAGCAACTAGATGACTGCCGGACCATTGCTGATTACAAAATCCAAAATGAGTCTACCCTTCGCCTCGTCTACCGCCTCTTGGGCGACTAG 1017 0.3972 MEPFTKDSPLDSSKDHVNNNSTLSLTFSDPHAFDCCICFETLSIPVFQCDNGHIVCSTCCRKLNMKCHNCSKHVTLKRCIAFDNLLRSLGKPCPNEKYGCRETISYGGNKHNEVCIYVPCYCLVSGCDFVASSEVLSNHFSQKHGDSINKFSYRKSFIVSLKSDDEIVVLQDKNDGKLFILHNSPMVMGNAINVSCIGPKYSKARYSYSILARSKICKLKLQSFAKNVQRVTLATLQSEFLMIPCGSSEPLKLKICITPMVKMHIFVKLPIGNTIDLMVESSDTIVNVKEKILDKEEVPVPIQRLIFAGKQLDDCRTIADYKIQNESTLRLVYRLLGD* 339
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal8g1476 338 SMART ubq_7 263 334 IPR000626 GO:0005515
Mal8g1476 338 PRINTS Ubiquitin signature 273 293 IPR019956 -
Mal8g1476 338 PRINTS Ubiquitin signature 294 314 IPR019956 -
Mal8g1476 338 PRINTS Ubiquitin signature 315 336 IPR019956 -
Mal8g1476 338 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 84 140 IPR013083 -
Mal8g1476 338 SUPERFAMILY Ubiquitin-like 255 337 IPR029071 -
Mal8g1476 338 ProSiteProfiles Zinc finger SIAH-type profile. 88 145 IPR013010 GO:0008270
Mal8g1476 338 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SINA-LIKE 4 14 261 IPR044286 -
Mal8g1476 338 SUPERFAMILY TRAF domain-like 91 258 - -
Mal8g1476 338 Pfam Seven in absentia protein family 78 232 IPR018121 GO:0005737|GO:0006511|GO:0007275
Mal8g1476 338 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SINA-LIKE 4 14 261 - -
Mal8g1476 338 Pfam Ubiquitin family 265 335 IPR000626 GO:0005515
Mal8g1476 338 Gene3D - 259 338 - -
Mal8g1476 338 ProSiteProfiles Ubiquitin domain profile. 263 338 IPR000626 GO:0005515
Mal8g1476 338 ProSitePatterns Ubiquitin domain signature. 289 314 IPR019954 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal8g1476 Mal-Chr8 28288917 28290778 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal8g1476 263 337 Cytoplasmic Ribosomal Protein Gene Family AT1G23410 69.333 1.60e-25 98.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal8g1476 K04506 - gmx:100778869 225.328