Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal8g1475 ATGGAGCCTCTGAATATTTCCAACCCTAACTTGCTTGATTGCTGCAATTGCTTTCAACCCTTAACTATTTACGTCTTTCAGTATGATAATGGCCATATTGTTTGCTCTACCTGCTGTCCTAAACTTAGGAACAAGTGTCACGAGTGCTCGTTGCCCATTAGCTCAAAACATTGTAAAGCCATTGAAAATCTATTGCAATCTATCAAAGTGTCATGCTCGAATGAAAAACATGGTTGCAGGGAGAAAATAAGTTACACTCGAAAGAGGAAGCATGAAGAAGAATGCACATATGGAAAATGTTACTGTCCATTTTCAGGTTGTGACTTTGTTGCATCATCAGAAGTGTTGTCAAATCATTTCAGCCATAAACACAGGGATTCTCAAATCAAATTTTCTTATGGTCACTCCTTCATTGTCTCCTTGATGTCTAAAGATGAAACCATTGTTCTTCAAGAGGAAAATGATAGCAAACTATTTATTCTCAATAATAGTACTACGCTTCTGGGAAATATGGTCAATATTTGCTGCATTGAGCCTAACTCCTCTGTGTCCGAGTATAGTTATGATATATTGGCTATGTCTCAAATATGCAAACTACAATTACAATCTTTTGCGAAGAACGTCCAACAGGTTTCTTTAGCAACTCCTTCATCAGAGTTGCTTGTGATTCCATTTGTTTCTTCTGAACCTCTCAAGCTAGATATCTGCATAACCCTCCCCATGATACAAATCTACATAAAGGACCTGATTGGAAGGACTATCGTCATGAGGGCTAAGAGTTCAGTCATGATAGTCAATCTGAAGAAGAAGATTCTTGAAGAGAAACGGATCCCAGTGCACGAGCAACGTCTAATCTTTGATGGTAAGCAACTAGAGGACAACATGACCCTTGCCAATTACAACATCCAAGAGGAGTCAACCATCCACCTCATACAAATCTTTGTAAAAACTCTGACTGGAAATATGATCCTCTTGGAGGTAGAGAGTTCAGACACGATGGCTAACGTGAAAGCAAAAGTTCAAGTCAAGGAATGGTTCCCACTGCACGATTACAACATTGCTGATTACCGGCATAAGCAACTAGACGACCGGCATACCATCGCTGATTACAACATCCAAGAGAAATGTATCCTCCGTCTCCAAGCTAAACCCTCAGCATGA 1161 0.3979 MEPLNISNPNLLDCCNCFQPLTIYVFQYDNGHIVCSTCCPKLRNKCHECSLPISSKHCKAIENLLQSIKVSCSNEKHGCREKISYTRKRKHEEECTYGKCYCPFSGCDFVASSEVLSNHFSHKHRDSQIKFSYGHSFIVSLMSKDETIVLQEENDSKLFILNNSTTLLGNMVNICCIEPNSSVSEYSYDILAMSQICKLQLQSFAKNVQQVSLATPSSELLVIPFVSSEPLKLDICITLPMIQIYIKDLIGRTIVMRAKSSVMIVNLKKKILEEKRIPVHEQRLIFDGKQLEDNMTLANYNIQEESTIHLIQIFVKTLTGNMILLEVESSDTMANVKAKVQVKEWFPLHDYNIADYRHKQLDDRHTIADYNIQEKCILRLQAKPSA* 387
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal8g1475 386 PRINTS Ubiquitin signature 294 315 IPR019956 -
Mal8g1475 386 PRINTS Ubiquitin signature 273 293 IPR019956 -
Mal8g1475 386 PRINTS Ubiquitin signature 252 272 IPR019956 -
Mal8g1475 386 ProSiteProfiles Ubiquitin domain profile. 242 311 IPR000626 GO:0005515
Mal8g1475 386 Pfam Seven in absentia protein family 59 223 IPR018121 GO:0005737|GO:0006511|GO:0007275
Mal8g1475 386 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SINA-LIKE 4 6 238 - -
Mal8g1475 386 SUPERFAMILY Ubiquitin-like 240 311 IPR029071 -
Mal8g1475 386 SUPERFAMILY TRAF domain-like 67 238 - -
Mal8g1475 386 ProSiteProfiles Ubiquitin domain profile. 311 386 IPR000626 GO:0005515
Mal8g1475 386 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 62 120 IPR013083 -
Mal8g1475 386 Gene3D - 311 381 - -
Mal8g1475 386 Gene3D - 240 310 - -
Mal8g1475 386 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SINA-LIKE 4 6 238 IPR044286 -
Mal8g1475 386 SUPERFAMILY Ubiquitin-like 310 382 IPR029071 -
Mal8g1475 386 SMART ubq_7 242 310 IPR000626 GO:0005515
Mal8g1475 386 SMART ubq_7 311 383 IPR000626 GO:0005515
Mal8g1475 386 ProSiteProfiles Zinc finger SIAH-type profile. 67 125 IPR013010 GO:0008270
Mal8g1475 386 Pfam Ubiquitin family 313 380 IPR000626 GO:0005515
Mal8g1475 386 Pfam Ubiquitin family 244 311 IPR000626 GO:0005515
Mal8g1475 386 ProSitePatterns Ubiquitin domain signature. 268 293 IPR019954 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal8g1475 Mal-Chr8 28259259 28283646 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal8g1475 311 380 Cytoplasmic Ribosomal Protein Gene Family AT1G23410 57.143 1.25e-16 75.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal8g1475 K04506 - gmx:100797881 238.424