Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal8g1474 ATGACAAGGAAAATGGGCTCCCTTGTTCTTGTCTTCCATTTTCTCCTCCAAAATGGCTGTCTCCCTTCCTCACCTTGTGCGGCTGGGCAAAAAGGTCCTGATAATTCAGAGTTTGATAAGGAGTGTGATAATGGTCATATTGTTTGCTCTACCTGCGGTCCTAAACTTTATAACGAGTATCACAACTGCTCGAAACGTATTAGCTTAAAACGTTGTTTAGCCTTTGACAATCTGTTGCGATCTCTCGGAACATCATGCCCAAATGAAAAATATGGTTGCAGGGATATTATAAGTTATGGTGGAAACAAGCATGAAGAAGAATGCATCTATGTGCCATGTTACTGCCCCGTATCAGGTTGTGACTTTGTTGCCTCATCTGCAGTGTTGTCCAACCATTTCAGCCATAAACACTGGGATTCTGTAATCGAATTTTCTTATGGTCACTCCTTCATTGTCTCCTTGAAATCTAATGACAAGATTGTTGTTCTTCAAGAGGAAAATGATGGGAAACTATTTATTCTCAATAATAGTACTACACTTATGGGAAATGCAGTCAATATTAGTTGCATTGATCCTAACTCTTTTGAGTCGAAGTATCGTTATGATATATTTGCTCGATCCAAGATATGCAAAGTGAAATTACAGTCTTTTGCGAAGAACATTCAACGGGTTACTGCAACTCTTTTATCGGAGTTCCTTGTGATTCCATTTAGTTTTGAACTTCTCAAGCTAGAAATTTGCATAACCCCCATGATGGAAATCTACATAATTGGCATGGATGGAGTGATGACCCCCTTGATGGTTGAGAGTTCAGATACAATAGCCAATGTGAAGGAGAAGTTTCTTGACATAAAAGGGATCTTTGTGTACCATCAAGTTCTGATGTTTGCCGGTAAGGAACTAGATAATAGCCAGACACTTGCCGATTATAACATCGAAGATGAGTCAACCATCTACTCCGTGATCCGCATTATTGGGGACTAG 984 0.3974 MTRKMGSLVLVFHFLLQNGCLPSSPCAAGQKGPDNSEFDKECDNGHIVCSTCGPKLYNEYHNCSKRISLKRCLAFDNLLRSLGTSCPNEKYGCRDIISYGGNKHEEECIYVPCYCPVSGCDFVASSAVLSNHFSHKHWDSVIEFSYGHSFIVSLKSNDKIVVLQEENDGKLFILNNSTTLMGNAVNISCIDPNSFESKYRYDIFARSKICKVKLQSFAKNIQRVTATLLSEFLVIPFSFELLKLEICITPMMEIYIIGMDGVMTPLMVESSDTIANVKEKFLDIKGIFVYHQVLMFAGKELDNSQTLADYNIEDESTIYSVIRIIGD* 328
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal8g1474 327 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 77 133 IPR013083 -
Mal8g1474 327 SMART ubq_7 252 323 IPR000626 GO:0005515
Mal8g1474 327 Gene3D - 248 327 - -
Mal8g1474 327 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SINA-LIKE 4 41 252 IPR044286 -
Mal8g1474 327 SUPERFAMILY Ubiquitin-like 240 326 IPR029071 -
Mal8g1474 327 PRINTS Ubiquitin signature 304 325 IPR019956 -
Mal8g1474 327 PRINTS Ubiquitin signature 262 282 IPR019956 -
Mal8g1474 327 PRINTS Ubiquitin signature 283 303 IPR019956 -
Mal8g1474 327 SUPERFAMILY TRAF domain-like 84 211 - -
Mal8g1474 327 ProSiteProfiles Zinc finger SIAH-type profile. 81 138 IPR013010 GO:0008270
Mal8g1474 327 Pfam Seven in absentia protein family 71 234 IPR018121 GO:0005737|GO:0006511|GO:0007275
Mal8g1474 327 ProSiteProfiles Ubiquitin domain profile. 252 327 IPR000626 GO:0005515
Mal8g1474 327 Pfam Ubiquitin family 258 323 IPR000626 GO:0005515
Mal8g1474 327 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SINA-LIKE 4 41 252 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal8g1474 Mal-Chr8 28244885 28246766 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal8g1474 252 326 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 50.667 8.60e-18 76.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal8g1474 K04506 - nnu:104587777 192.971