Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal8g1423 ATGTCTCTGCCTCAGGCAGCCCGTGTAGACCCCAGAATATGGCAGACATGCGCTGGCACCGACGCCAAGATTCCGAAGATTCACTCTAAAGTTTACTACTTCCCACAAGGTCATTTGGAACATGCATGTCCTTCCCCTAACGTTTTGACAATCAGCATTCTTGAACGTTACAGTCCATCCTTTCCATGCATCATCTCAGCCGTTGATCTCTTTGTTGATCCTCGCACTGACGAGGTTTTCGCCAAACTGCTCCTCACTCCCATAACTGACCAAGAACCTCCTCCTCCTCCTCTTCCTCCCGTGGTTCCTGGCCAAGAACCAACTCCTCTTGTTTCTTATGTCAAGACTCTTACAAAATCTGATTGTAAAAATGTATTAAAAGTACCTCTTGAATGCGCTGACTTGATCTTGCCAAAGCTTGATTTGGAAGAGTCTCAGAACCTCTCCGTCACCGATCTTCAAAGCCGAGAATGGGGGTACAATTATTCCTACTTGAGACTCAGTAGAGTACACCGTCTCGCTTATGGATGGTCTTACTTTGTGAACGAGAAGAAACTCGTGCCTAACGATTCTGTTGTTTTCATGAAAAACTCTGCTGGAAAGATATTAGTCGGAATTCGTAGGAGCACGAAGTTTACTGCAGATGAAGCGGGTGAAGGAGGCGGAAATTTAACTGAGATTGCGGTTTTGGATGCAGTGAAATTGGCAGACAAGAACGCGGCGTTTGAAGTTGTGTATTATCCGACAGCTAGGAATTGGTGCAATTTTGTGGTTGATGCTAATCTTGTTGATGAAGCTATGAAGATTAGTTGGGCATCTGGAATGAGAGTGAAGCTGCTTTCTTTGAAGAATAAAGAATCTTCAAATTCAAAGATGACATATTATCAGCCTAAGGGGACAATCTCTTTTGTCTTTAATCATTCTTCTAATGTCCCTAATTGGCACATGCTTGAGGTTAACTGGGATGAAACCAAAATCTCGCAGAATCCAAACCTAGTCAATCCTTGGCAGGTTGAAGTTTGCAACATACCTACACAAGATCTACCATTCCCGTCAACAAAATGTCGTAGACATACTCAAAGTTCTTCCCCCCAACAAATTTCATATTCTTCTCCGCCAATTACACTGCCTCAATTACCACCTCCACCATTAACTTCCACCTTCATTCCTATGCCAGAGTTCTCTTTTCCTGCTGGCAAGCAGGTTGCCAGGCATGACCATTTATCTGTATCAGATTCTTCAAAAGTTTCGAACAATAAGGCTGATGGTTTCATTGGTAGTTTGTCTGACACAGAGCTAAACATTGACAGTCCTAAATCTGCTGACTTGTTGCCTCATAACCATAATAGTTTGAACTCGGCTGGGAGCAATGAACCATGCACCAAGTGA 1389 0.4341 MSLPQAARVDPRIWQTCAGTDAKIPKIHSKVYYFPQGHLEHACPSPNVLTISILERYSPSFPCIISAVDLFVDPRTDEVFAKLLLTPITDQEPPPPPLPPVVPGQEPTPLVSYVKTLTKSDCKNVLKVPLECADLILPKLDLEESQNLSVTDLQSREWGYNYSYLRLSRVHRLAYGWSYFVNEKKLVPNDSVVFMKNSAGKILVGIRRSTKFTADEAGEGGGNLTEIAVLDAVKLADKNAAFEVVYYPTARNWCNFVVDANLVDEAMKISWASGMRVKLLSLKNKESSNSKMTYYQPKGTISFVFNHSSNVPNWHMLEVNWDETKISQNPNLVNPWQVEVCNIPTQDLPFPSTKCRRHTQSSSPQQISYSSPPITLPQLPPPPLTSTFIPMPEFSFPAGKQVARHDHLSVSDSSKVSNNKADGFIGSLSDTELNIDSPKSADLLPHNHNSLNSAGSNEPCTK* 463
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal8g1423 462 MobiDBLite consensus disorder prediction 351 373 - -
Mal8g1423 462 MobiDBLite consensus disorder prediction 405 462 - -
Mal8g1423 462 MobiDBLite consensus disorder prediction 443 462 - -
Mal8g1423 462 Gene3D - 271 346 - -
Mal8g1423 462 MobiDBLite consensus disorder prediction 374 388 - -
Mal8g1423 462 CDD B3_DNA 112 208 IPR003340 GO:0003677
Mal8g1423 462 SUPERFAMILY DNA-binding pseudobarrel domain 109 210 IPR015300 -
Mal8g1423 462 Pfam Auxin response factor 232 306 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Mal8g1423 462 SMART B3_2 113 210 IPR003340 GO:0003677
Mal8g1423 462 ProSiteProfiles B3 DNA-binding domain profile. 111 210 IPR003340 GO:0003677
Mal8g1423 462 Gene3D - 111 210 IPR015300 -
Mal8g1423 462 MobiDBLite consensus disorder prediction 412 436 - -
Mal8g1423 462 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 6 389 IPR044835 GO:0003677|GO:0006355|GO:0009725
Mal8g1423 462 PANTHER AUXIN RESPONSE FACTOR 17 6 389 - -
Mal8g1423 462 MobiDBLite consensus disorder prediction 351 391 - -
Mal8g1423 462 Pfam B3 DNA binding domain 114 209 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal8g1423 Mal-Chr8 26973337 26975072 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal8g1423 8 458 B3 DNA Binding Superfamily AT1G77850 35.029 1.68e-77 251
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Mal8g1423 B3 2.2e-11 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal8g1423 - - mtr:MTR_5g060780 473.011