Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal8g1371 ATGGAGAAGACTAGAGGTGTGAGAAAAGGTGCATGGACATATGAAGAAGACAAGCTACTCAAGGCTTGCATTAACAAGTATGGTGAAGGAAAATGGCATTTAGTTCCTCAAAGAGCAGGATTGAATAGGTGTCGGAAAAGTTGTAGATTGAGGTGGTTAAATTATTTAAACCCCACAATCAACCGGGAAAGCTTTTCTGGAGATGAAGTTGATCTGATTCTAAGGTTACACAAACTCTTGGGGAACAGATGGTCATTGATTGCTGCAAGGCTTCCGGGTAGAACAGCTAATGATGTGAAGAATTATTGGCACACACATTTACGCAAGAAGGTAATTTCAAGAAAAGAAGAAAAGAAAGAACAAGAGAATTTACCTAAGGAAACCATGAAAACTCATGAAGTTATTAAACCTCAACCTCGAACTTTTTCAACCCATTCACCTTTGTTGAATGGGAAACCAAATTTCGTGAAACCAATAGTGGAAGTTTCGACAAAAGATAGTACTGTTGCAAAAGATAGTGACATAATAGAGACTATGCTACCAATTAATGGTGATGGAGATTGTGCTGCACAACCATGTCCTGGAAATTCTACACTGTCTACCATGTGGTGTGAGAGTTTGTTACAAGAGGAGGAAAATTCCAATTTAGAGTTTCTAAATGTTGATAACTTTTTTACTGAAGGACCCAGTACTTTCAGTGATTGGTATTTGGATACCAACCTTTGTGAATTTGATTCTCTTTTAGATATTTTAAACTAA 759 0.3715 MEKTRGVRKGAWTYEEDKLLKACINKYGEGKWHLVPQRAGLNRCRKSCRLRWLNYLNPTINRESFSGDEVDLILRLHKLLGNRWSLIAARLPGRTANDVKNYWHTHLRKKVISRKEEKKEQENLPKETMKTHEVIKPQPRTFSTHSPLLNGKPNFVKPIVEVSTKDSTVAKDSDIIETMLPINGDGDCAAQPCPGNSTLSTMWCESLLQEEENSNLEFLNVDNFFTEGPSTFSDWYLDTNLCEFDSLLDILN* 253
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal8g1371 252 SUPERFAMILY Homeodomain-like 6 103 IPR009057 -
Mal8g1371 252 Pfam Myb-like DNA-binding domain 62 107 IPR001005 -
Mal8g1371 252 Pfam Myb-like DNA-binding domain 9 56 IPR001005 -
Mal8g1371 252 CDD SANT 64 107 IPR001005 -
Mal8g1371 252 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 57 111 IPR017930 -
Mal8g1371 252 SMART sant 8 58 IPR001005 -
Mal8g1371 252 SMART sant 61 109 IPR001005 -
Mal8g1371 252 ProSiteProfiles Myb-like domain profile. 4 56 IPR001005 -
Mal8g1371 252 Gene3D - 9 61 - -
Mal8g1371 252 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 4 56 IPR017930 -
Mal8g1371 252 CDD SANT 11 56 IPR001005 -
Mal8g1371 252 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 4 163 - -
Mal8g1371 252 Gene3D - 63 136 - -
Mal8g1371 252 PANTHER TRANSCRIPTION FACTOR MYB113-RELATED 4 163 - -
Mal8g1371 252 ProSiteProfiles Myb-like domain profile. 57 107 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal8g1371 Mal-Chr8 25773409 25775943 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal8g1371 2 227 MYB Transcription Factor Family AT1G66370 47.391 3.32e-63 196
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Mal8g1371 Myb_DNA-binding 3.4e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal8g1371 - K09422 mtr:MTR_5g078860 295.819