Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal8g1346 ATGCGGAGGAACAGTCCAGGTTACTACAGTCCTCCACGGAGAGGATACGGTGGAAGGGGTGGCGGTGGAGGTGGTGGTGGTAGGAGAGGATACGGTGGTGGAGGTGGAGGTAGGCGTAGAGAAGGAAACAATGGAAGTCTTTTGGTGAGGAACATTCCTTTGGATTGTAGACCTGAGGAGCTGAGGGCGCCGTTCGAGCGATTTGGGCCGGTTCGTGATGTTTATATACCGAAGGATTATTACTCTGGACAACCTCGAGGCTTTGCATTCGTGCAGTTTGTGGATTCATATGATGCCTCTGAGGCGCAGTACCATATGGACAGACAAATTTTTGCTGGAAGGGAAATATCTGTAGTTGTGGCTGCAGAGACAAGAAAAAGGCCAGAGGAGATGCGTCATAGGACTAGTAGGTCCAGAGGACCAGGGAGCTATGGAGGGCAAAGGTCTTCTTACCATGGGCATTCCCGATCTCGCTCAATTTCCAGATCAAGATCACCTCCTTATCACTCTGGGTCTAGAAGTCGCTATCGCTCTAGGTCCAGGTCCTTCTCTCCTGCCCCAAGAAGGCAAGGTGACTACTCTGTTTCTCCTAGAAGGCATGCAGAACGCCCTAGATCACCTAGAAGTCCTCCTAGAAGTCCCCCTGTAGAGCGAGATGAGGATCATAAACGCAGGTCGTATTCTCCAGGTTATGACAATGGTGCTGATCAGAATCAAAGCAATGGATTTGCTGAGAAATCTATGTACAAATCTGAGGCTGATCGAGGCCAGTGGAAGTCATCAAGATCACCCCCAGGATCTAGATCTAGGTCAAGATCTGCTGATTTGTCACCTAGACGTGGCAGATGA 849 0.5006 MRRNSPGYYSPPRRGYGGRGGGGGGGGRRGYGGGGGGRRREGNNGSLLVRNIPLDCRPEELRAPFERFGPVRDVYIPKDYYSGQPRGFAFVQFVDSYDASEAQYHMDRQIFAGREISVVVAAETRKRPEEMRHRTSRSRGPGSYGGQRSSYHGHSRSRSISRSRSPPYHSGSRSRYRSRSRSFSPAPRRQGDYSVSPRRHAERPRSPRSPPRSPPVERDEDHKRRSYSPGYDNGADQNQSNGFAEKSMYKSEADRGQWKSSRSPPGSRSRSRSADLSPRRGR* 283
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal8g1346 282 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 45 123 IPR000504 GO:0003723
Mal8g1346 282 PANTHER OS02G0252100 PROTEIN 22 280 - -
Mal8g1346 282 MobiDBLite consensus disorder prediction 231 246 - -
Mal8g1346 282 MobiDBLite consensus disorder prediction 258 272 - -
Mal8g1346 282 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 22 280 - -
Mal8g1346 282 MobiDBLite consensus disorder prediction 123 282 - -
Mal8g1346 282 MobiDBLite consensus disorder prediction 140 189 - -
Mal8g1346 282 MobiDBLite consensus disorder prediction 123 137 - -
Mal8g1346 282 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 47 116 IPR000504 GO:0003723
Mal8g1346 282 MobiDBLite consensus disorder prediction 1 46 - -
Mal8g1346 282 Gene3D - 37 165 IPR012677 -
Mal8g1346 282 SUPERFAMILY RNA-binding domain, RBD 43 151 IPR035979 GO:0003676
Mal8g1346 282 SMART rrm1_1 46 119 IPR000504 GO:0003723
Mal8g1346 282 MobiDBLite consensus disorder prediction 193 229 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal8g1346 Mal-Chr8 25318764 25322716 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal8g1346 35 107 Eukaryotic Initiation Factors Gene Family AT3G11400 36.986 1.77e-06 46.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal8g1346 K12900 - gmx:100804294 320.087