Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal8g1336 ATGGGTAAGAAAAACAAAGCCATGAAGGAAAATAGCGACGGAAGCATAAAACAATGTCCCTTAACTCTTTTCGTCTCTAACTTACCCTATTCCTTCACAAACTCTCAGCTTGAAGAAACTTTCAGTGAAGTTGGACCTGTTAGGCGTTGTTTCATGGTTACACAAAAGGGGTCTGCACAACATCGTGGTTTTGGTTATGTTCAATTTGCTGTTGAGAAAGACGCTAACCAAGCCATTGAGCTGAAGAACGGTTCATTGGTTGGTGACCGGAAAATTGTAGTGAAGCATGCAATGCCTCGTCCTCCCCGTGAAAATCGAAGATTAAAACCGGATCAAGAGGGCAAGGAAGGTGATCTCACAGAGTCAAAAAATGATGATAAAGACAGCGGATTATCGGGAGCAGAGAAGCCTGTTTCAGTTCCAAAGGAACCAAAGGAAGAAGAAGAGAAAGTTTTGAATAAACCGAAAATCTCAAGGAAGCCCGTGGAAATAAAAAAAGCAGCTCTTTGTGATGATGCAGCAGATGAGGGGGGTGGCTCAGAAAAGCAGAAGGTTGCTAGAACTGTTATATTTGGTGGTCTCATGAATTCTGCTATGGCTGAAGATGTTCACCGCCAAGCCAAAGATATTGGCACTGTGTGTTCTATTAAGTATCCCCTTTCAAGGAGTGATCTTCAGCAACATGGTCTGCTCCAAGATGGCTGTACTTTGGATGCTTCAGCTGTAATATATACAAGTGTAAAATCAGCTCGAGCTTCTGTTGCAAAATTGCATAAAACAGAGATTGGAGGGGGAACTATTTGGGCGCGCCAACTTGGTGGTGAGGGCTCCAAGACTCAGAAATGGAAGCTTATTGTGAGAAACCTTCCTTTCAAGGCCGAAGAAAATGAAATAAGAGACAAGTTTTCATCTGCAGGGTATGTATGGGAGGTATACATTCCTCAGAAATCTGACACAGGTCTTTCAAGGGGTTTTGCATTTGTAAAATTCACCTGCAAGCAAGATGCTGAAAATGCCATTCAAAAACTCAATGGATCGAAGTTTGGGAGTCGTCTCATAGCTGTTGACTGGGCTGTTCCAAAAAAGATATTTAGTAGTGATACTAATGATGCTCCTGCGTCAGAGGAAGGGCAACAAAAGGTGACAGATGAAGATGGTAGTACTACTACTGAGGATGATCTTGAGCATACTGACAAAGAATCTGATCATGGAGATGATAGTGATATTGATAGTGTCGTGGAGGAAGATGTTCCTTCTGACGATGATTTTGACAAGGAAGCAGACATTGCAAGAAAAGTTCTTAACAACTTGATTACATCATCTGCCAAAGATGCATCTGTAAATAATGATTCTTTGTCTTCCGAAGAAAATAACGAGCCAAAATCCAAGGAAACTGTTAAGGGTGCAGTTAGTAAAGCATCTAAAGAGTCCGACAAGGTTTCAGATGTTTCTAAGCCTGAAACTTCCAAGGAAACAGAAGATGATTTGCACAGAACAGTTTTTATAACCAATCTTCCCTTTGAATTAGATACCGAAGAAGTGAAGCAACGGTTTTCTGCATTTGGAGAAGTGGAATATTTTGCTCCTGTTCTCCACCAAGTGACCAAGCGTCCACGAGGGACTGGTTTTCTTAAGTTTAAAACTGCGGAAGCAGCTGATAATGCAATTTCAACTGCCAATACTGCTTCTGGGATGGGTATTTTAGTGAAGGGTAGACCATTAAAAGTTTTAAAGACTCTAGACAAGAAATCTGCTCATGACAAGGAACAGGAGAAAGCAAAAAATGAGGTTCATGACCACCGCAATCTTTACTTGGCAAAGGAGGGACTTATTCTTGATGGAACTCCAGCTGCTGAAGGGGTTTCAGCCAGTGATATGTCAAAACGTAAAGATTTGGAAAGGAAAAAGAAGATGAAGCTTCAATCTCCAAATTTTCATGTTTCAAAAACTAGACTTGTTATCTACAACTTACCAAAGTCAATGACTGAAAAAAAACTTAAGAAGCTTTGCATTGATGCAGTCATCTCTAGAGCTACGAAGCAAAAACCTGTAATTCGGCAGATAAAGATTTTGAAAGATGGAAGGAAAGGAAAGGCTACTCAAGAACAGTATTCCCGTGGAGTTGCCTTTCTTGAATTTTCAGAGCATCAACATGCCCTTGTTGCTTTGAGAGTTCTTAACAATCATCCTGAAACCTTTGGCTCCGAACATCGGCCAATTGTGGAGTTCGCTCTTGATAATGTCCAAACAATGAAACTTCGTAATGCAAAGATACAGTATCAGCAGCAGGCTCCTCACGACAACAACAGAAACGAAAATGATAAACCCGACAATGCAAGAGTAATCACTCATGGAACCGACAGAAAACGAAAATCTCAAGAGCATGACAAACTAGCAAAAGACTTGGCACCAAATTCAAATAGTGAACAAGGTGGTAAAGAGCCCAATGGAAAATCTCCTGAAGGAGGCAAATCCAAAAGACGGAAAGAGAACAACCCTAAGAGTACAAATGCCGAAGTGATATCATCGAAAGAAAGTCCAAAAGCTTCTTCGGCGAGGAAGCTAAAAACTAACCAAGATGGCCAGAATCATGGTGCTAAATTACATGAAGGTAAAAATAGTTCCATTGACAGCAACAGGAAAAATTCAGGAAAGAAAGATAATGTGGTATATGGAAAGAGGAAGATGCATAACCAAGAACCGGCAGGGGAAAAGGTTTCTAGGAAAAGGGCAAAGAAGAATAAAGATACAGTTGGGAAGGACACAGTAGATAAGCTTGACATGCTTATAGAACAATATAGGTCCAAGTTCTCACACAAGAGTTCTCAAGGAAATGATGGTGAGAAAAAACAATCTAAACAGCTTAGGAAATGGTTCCAATCGTGA 2886 0.4068 MGKKNKAMKENSDGSIKQCPLTLFVSNLPYSFTNSQLEETFSEVGPVRRCFMVTQKGSAQHRGFGYVQFAVEKDANQAIELKNGSLVGDRKIVVKHAMPRPPRENRRLKPDQEGKEGDLTESKNDDKDSGLSGAEKPVSVPKEPKEEEEKVLNKPKISRKPVEIKKAALCDDAADEGGGSEKQKVARTVIFGGLMNSAMAEDVHRQAKDIGTVCSIKYPLSRSDLQQHGLLQDGCTLDASAVIYTSVKSARASVAKLHKTEIGGGTIWARQLGGEGSKTQKWKLIVRNLPFKAEENEIRDKFSSAGYVWEVYIPQKSDTGLSRGFAFVKFTCKQDAENAIQKLNGSKFGSRLIAVDWAVPKKIFSSDTNDAPASEEGQQKVTDEDGSTTTEDDLEHTDKESDHGDDSDIDSVVEEDVPSDDDFDKEADIARKVLNNLITSSAKDASVNNDSLSSEENNEPKSKETVKGAVSKASKESDKVSDVSKPETSKETEDDLHRTVFITNLPFELDTEEVKQRFSAFGEVEYFAPVLHQVTKRPRGTGFLKFKTAEAADNAISTANTASGMGILVKGRPLKVLKTLDKKSAHDKEQEKAKNEVHDHRNLYLAKEGLILDGTPAAEGVSASDMSKRKDLERKKKMKLQSPNFHVSKTRLVIYNLPKSMTEKKLKKLCIDAVISRATKQKPVIRQIKILKDGRKGKATQEQYSRGVAFLEFSEHQHALVALRVLNNHPETFGSEHRPIVEFALDNVQTMKLRNAKIQYQQQAPHDNNRNENDKPDNARVITHGTDRKRKSQEHDKLAKDLAPNSNSEQGGKEPNGKSPEGGKSKRRKENNPKSTNAEVISSKESPKASSARKLKTNQDGQNHGAKLHEGKNSSIDSNRKNSGKKDNVVYGKRKMHNQEPAGEKVSRKRAKKNKDTVGKDTVDKLDMLIEQYRSKFSHKSSQGNDGEKKQSKQLRKWFQS* 962
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal8g1336 961 PANTHER RNA-BINDING MOTIF PROTEIN, Y CHROMOSOME, FAMILY 1 MEMBER C-RELATED 453 762 - -
Mal8g1336 961 MobiDBLite consensus disorder prediction 93 132 - -
Mal8g1336 961 Gene3D - 2 135 IPR012677 -
Mal8g1336 961 Gene3D - 269 393 IPR012677 -
Mal8g1336 961 PANTHER RNA-BINDING MOTIF PROTEIN, Y CHROMOSOME, FAMILY 1 MEMBER C-RELATED 10 367 - -
Mal8g1336 961 MobiDBLite consensus disorder prediction 456 494 - -
Mal8g1336 961 CDD RRM3_RBM28_like 498 577 - -
Mal8g1336 961 Gene3D - 649 744 IPR012677 -
Mal8g1336 961 SUPERFAMILY RNA-binding domain, RBD 497 729 IPR035979 GO:0003676
Mal8g1336 961 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 498 581 IPR000504 GO:0003723
Mal8g1336 961 MobiDBLite consensus disorder prediction 863 934 - -
Mal8g1336 961 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 282 360 IPR000504 GO:0003723
Mal8g1336 961 SUPERFAMILY RNA-binding domain, RBD 278 363 IPR035979 GO:0003676
Mal8g1336 961 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 23 92 IPR000504 GO:0003723
Mal8g1336 961 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 500 561 IPR000504 GO:0003723
Mal8g1336 961 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 284 353 IPR000504 GO:0003723
Mal8g1336 961 MobiDBLite consensus disorder prediction 407 423 - -
Mal8g1336 961 MobiDBLite consensus disorder prediction 819 834 - -
Mal8g1336 961 SUPERFAMILY RNA-binding domain, RBD 22 269 IPR035979 GO:0003676
Mal8g1336 961 SMART rrm1_1 283 356 IPR000504 GO:0003723
Mal8g1336 961 SMART rrm1_1 499 577 IPR000504 GO:0003723
Mal8g1336 961 SMART rrm1_1 651 742 IPR000504 GO:0003723
Mal8g1336 961 SMART rrm1_1 22 95 IPR000504 GO:0003723
Mal8g1336 961 MobiDBLite consensus disorder prediction 365 424 - -
Mal8g1336 961 MobiDBLite consensus disorder prediction 445 494 - -
Mal8g1336 961 CDD RRM4_RBM28_like 650 747 - -
Mal8g1336 961 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 650 763 IPR000504 GO:0003723
Mal8g1336 961 CDD RRM2_RBM28_like 283 359 - -
Mal8g1336 961 MobiDBLite consensus disorder prediction 768 802 - -
Mal8g1336 961 PANTHER RNA BINDING PROTEIN 10 367 - -
Mal8g1336 961 PANTHER RNA BINDING PROTEIN 453 762 - -
Mal8g1336 961 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 21 99 IPR000504 GO:0003723
Mal8g1336 961 MobiDBLite consensus disorder prediction 760 961 - -
Mal8g1336 961 MobiDBLite consensus disorder prediction 377 406 - -
Mal8g1336 961 CDD RRM1_RBM28_like 22 100 - -
Mal8g1336 961 Gene3D - 484 590 IPR012677 -
Mal8g1336 961 MobiDBLite consensus disorder prediction 835 862 - -
Mal8g1336 961 MobiDBLite consensus disorder prediction 92 154 - -
Mal8g1336 961 MobiDBLite consensus disorder prediction 941 955 - -
Mal8g1336 961 MobiDBLite consensus disorder prediction 139 154 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal8g1336 Mal-Chr8 25122644 25130946 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal8g1336 286 361 Eukaryotic Initiation Factors Gene Family AT3G11400 39.474 1.67e-11 64.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal8g1336 K14573 - gmx:100791823 1281.93