Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal8g1329 ATGTTTGGTGTTAGCAGAATACAAATTCTTTTCAATGTCCGAGAAGCATCCCTAGACTTGTACCTGTTTTACTTGGAGGTCACCAGCAGAGGAGGTTATCACCAGGTTTGTCAAGAAAAGAAATGGGGTGAAGTTGTTTCTGCACTAAAACTTGATGGAAACAATGCAACCTTATGTGCTCAAGTTGAAAACCTCTATGCATATCTTCTGTACGATTTTGAGAAATTGTACTTCTACAGGTCTCCTGCAACTGGCAGCAAAATAGTTGAAAGGAAGCGAATCTCAACCACTGGCTTATCGCAATTAATAGATGATGAAGATTATCTGAAGGCGGCAAAGATATCCGAGGACTGCTTTAGTCAAATTACAGGAGTTGGATATCAAGAACTTCAAGTGTTTCAACAAGCAACCGCAAATAACAAAGAAAAGAAGAAACGGAGGTTTCAACAAGCACCTGCAAAAAACAATGAAAAGAAGAAACGGAGATGTGCTCCAATAGGACAGAGTGGATATAATATATTCCTCAAGCAGGAATGTGCTCGACTAAAAGCTTATCATCAGGACATTGGTGGCAGAAAAATCGTAGACATGGCTATTGATGCTTGGAATAAGTTGTCAGACAAGGAGAAACGGCCATATGAAGATGAAAGCAAGAAGATAAAGGAAAAAAAGAAAGAAGCGATGATCATTGACAATAACCAAAAGAGCACTCAAGATCTTAAGAGGGATGAAGAGATGCCCAATGCATGTGGTGACTTCTGCCGTGTAACTTCGCAACCTCTATCAGACTACTCTTTTGTCAACAATGCAGCGGTGGACTCATCTTTTAACATGACAAAAAATATCTGA 849 0.3958 MFGVSRIQILFNVREASLDLYLFYLEVTSRGGYHQVCQEKKWGEVVSALKLDGNNATLCAQVENLYAYLLYDFEKLYFYRSPATGSKIVERKRISTTGLSQLIDDEDYLKAAKISEDCFSQITGVGYQELQVFQQATANNKEKKKRRFQQAPAKNNEKKKRRCAPIGQSGYNIFLKQECARLKAYHQDIGGRKIVDMAIDAWNKLSDKEKRPYEDESKKIKEKKKEAMIIDNNQKSTQDLKRDEEMPNACGDFCRVTSQPLSDYSFVNNAAVDSSFNMTKNI* 283
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal8g1329 282 SUPERFAMILY ARID-like 14 80 IPR036431 GO:0003677
Mal8g1329 282 Gene3D High mobility group box domain 164 246 IPR036910 -
Mal8g1329 282 PANTHER HIGH MOBILITY GROUP B PROTEIN 9 148 280 - -
Mal8g1329 282 ProSiteProfiles ARID domain profile. 1 78 IPR001606 GO:0003677
Mal8g1329 282 SMART bright_3 2 79 IPR001606 GO:0003677
Mal8g1329 282 PANTHER HMG (HIGH MOBILITY GROUP) BOX PROTEIN 7 147 - -
Mal8g1329 282 SUPERFAMILY HMG-box 159 226 IPR036910 -
Mal8g1329 282 Gene3D - 5 93 IPR036431 GO:0003677
Mal8g1329 282 CDD ARID 18 74 - -
Mal8g1329 282 Pfam HMG (high mobility group) box 169 228 IPR009071 -
Mal8g1329 282 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 164 232 IPR009071 -
Mal8g1329 282 PANTHER HMG (HIGH MOBILITY GROUP) BOX PROTEIN 148 280 - -
Mal8g1329 282 PANTHER HIGH MOBILITY GROUP B PROTEIN 9 7 147 - -
Mal8g1329 282 MobiDBLite consensus disorder prediction 141 162 - -
Mal8g1329 282 Pfam ARID/BRIGHT DNA binding domain 14 74 IPR001606 GO:0003677
Mal8g1329 282 SMART hmgende2 165 233 IPR009071 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal8g1329 Mal-Chr8 24974890 24980310 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal8g1329 17 229 ARID Transcription Factor Family AT3G13350 24.896 2.17e-14 70.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Mal8g1329 HMG_box 5.8e-09 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal8g1329 - - mtr:MTR_5g080030 309.686