Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal8g1321 ATGCCAATATGTGCCGATTGTGATAGTGGGTTTGTTGAAGAGCTTGAAAATTCAACACATTCTGTTCATGCCACCGGTGGCCTTCGAAGGAGGTTTCCTATGGCGGCCGCTATGTACATGATCGGCGGCCACCACAATAACAATTCTAATCAAAATACTCATCGACGCAATTGTAGAAACAACATTAATGGCGGTAATGTTTCTTCGTTTAATCCAATAATCATGATCCGTGGTGGTGGTTCCTCTGAGGGGACGAGTCGCGAGGGTGAAGAGAATCGCGGGTTTGAGCTATTCTATGAAGAAGGTGATGGTTCTGGTCTTAGACCATTGCCTCCGAGGATGTCGGAGTTTATTCTTGGCTCTGGATTTGAAAGGGTGGTGGAACAACTTTCTCATGTTGAATTAGCTAATCATAGTGGAAATGAGAGACATAATCAAGAACATTTACCGGCATTAAAATCAGCGGTGGAATTGTTACCTATGATTAAAATTGATGAGAGTTATATGCAAATAGAATCACATTGTGCCGTTTGCAAAGAGCCTTTTGAAAATGGAATTGTAGCAAGGGAAATGCCATGCAAACATATATACCATAATGAATGTATACTTCCATGGCTTGCAATTCGAAATTCTTGTCCGGTTTGTCGCCATGAATTGCCTTGTGAATCACCACGACAAATTAACAATACTCATTTTGGTTTAAATGAAGAAGAGAATGTTGGTTTAACAATTTGGAGGTTACCGGGGGGAGGGTTCGCCGTTGGAAGATTTTCTGGTGGAACAAGAGGTCGTGGGGACGGGGACGGGGATGAGAATGAAAGAGAGGTTCCTATTGTTTACACTGAGGTGGATGGTGCATTTAACAATGTTGGTGAACCAAGGAGGATTTCATGGTCATTGACATCATCTAGAGGAAGGAGGGGAGGAAATAATGGTGGTGGATTTCGTCGAATGTTGAACAATTTGTTTGGATGTTTGAGAGGTGGTGGTGAAGTTCAACGTTCTCTTTTTGCTACTAGAAGAGAGTTTCCTCAACCTATGATCATAAGGAATAATAGTGCATCTCGTACCGATGGAAATCCTTCACCACGTTCACGTAGGACTTGGTCTATGGATGTAAATGGTGGAATTAGACCATGGTAA 1143 0.4226 MPICADCDSGFVEELENSTHSVHATGGLRRRFPMAAAMYMIGGHHNNNSNQNTHRRNCRNNINGGNVSSFNPIIMIRGGGSSEGTSREGEENRGFELFYEEGDGSGLRPLPPRMSEFILGSGFERVVEQLSHVELANHSGNERHNQEHLPALKSAVELLPMIKIDESYMQIESHCAVCKEPFENGIVAREMPCKHIYHNECILPWLAIRNSCPVCRHELPCESPRQINNTHFGLNEEENVGLTIWRLPGGGFAVGRFSGGTRGRGDGDGDENEREVPIVYTEVDGAFNNVGEPRRISWSLTSSRGRRGGNNGGGFRRMLNNLFGCLRGGGEVQRSLFATRREFPQPMIIRNNSASRTDGNPSPRSRRTWSMDVNGGIRPW* 381
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal8g1321 380 MobiDBLite consensus disorder prediction 350 380 - -
Mal8g1321 380 CDD RING-H2_RNF126_like 175 216 - -
Mal8g1321 380 Pfam Protein of unknown function (DUF1117) 240 330 IPR010543 -
Mal8g1321 380 MobiDBLite consensus disorder prediction 350 369 - -
Mal8g1321 380 Pfam Ring finger domain 174 216 IPR001841 -
Mal8g1321 380 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RING1-LIKE PROTEIN 1 322 - -
Mal8g1321 380 ProSiteProfiles Zinc finger RING-type profile. 175 216 IPR001841 -
Mal8g1321 380 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 1 322 - -
Mal8g1321 380 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 136 222 IPR013083 -
Mal8g1321 380 SMART ring_2 175 215 IPR001841 -
Mal8g1321 380 SUPERFAMILY RING/U-box 164 222 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal8g1321 Mal-Chr8 24576159 24577301 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal8g1321 109 222 C3H Transcription Factor Family AT5G01980 37.719 2.31e-18 84.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal8g1321 - K11982 gmx:100789228 369.777
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal2g2842 2 37636038 37637402 Mal8g1321 8 24576159 24577301 ECH
Mal8g1321 8 24576159 24577301 Mal8g1321 8 24576159 24577301 ECH