Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal8g1310 ATGGCTGCTAATCCTAAAAATACCTTGATTTCTGATGTAACTGAAAATGCCCACAATTTGGTGTTGACAGTTAGGGTTGTGAGAATGTGGCTTGTGCCTGAATTCTCAAACCCACAGAAATCTCACTCACTAGAGTTGGTCTTGCAAGACTCTGAGGGAAATAGAATACATGCAACTGCTAAGAAGACCCTAATTTATCGATTTCAAAAGCAAATCAGGGAGGATGTTGTTTATATTGTGTCCCTCTTTAATGTTATAAAAAACACAGGGGAATATAGGACCACACATCACAATTTTAAGATTGATATTCTCTATGATACCAAGTTTGAGAGAGCTGATAATAGTGTTGTTCCCTTAACTATCTACAACTTCACAACACCTGCTGAGATATTTCAAGATGCTTTTAACCGCGACTATTTAGTCGATGTGATTGGCGTTTTAACCGCTGTTGGCAAGGAAAGGGAGTATGTCAAGAATGGTGTGAGTACAAAAATTAATGTCATTGAGCTGGACAACAATGGGTATAAGTACCAGTGTTCATTATTTGGACAATATGTGGATGATCTGAACTCATTCCTTGCATCTGGGGACTCGATCAATGCTGTTGTCGTTGTTCTGTTTGCAAAATCCAAGATTTTTCAAAGGAAACCTGTTTTGCAAAATTCAATAAATGCTACAAAGATAATGTTTAATCCTGACATTCCTGAAGCATTGGCTTTTAGGGCGAGTGTGGCTGCAAATGAAGATTCCCCACCATTGGTGGTGAGTGAGCTGAGGGACACATATAAGGTTAGCTTTGAAGATGATATGCTAACCTTGACACCAAGAACAGTTATTGTTGATCTGAAGAATTGCAGCGAAGGTTCTGCTCATGTTGTTGCTGCCACTGTTGATGGCATGGTTGAATCCGGTACTTGGTGGTATTCTGCGTGTCAGTGTAACAAAAAGGTCTACCCTGCGGACAATATGTATTTTTGTGAGAAGTGTGATCGCCATGTGGTTAACGTTACCCCGAGGTTTTGTTTGAAGCTTCGGGTCAAGGATGACACATCCATGTCAACCTTTGTTGTTTTTGACCGTGATGCAACACTATTGCTGAAGAAAAGTTGTACTGAAATGATTGAAGCTAGCAATATGAGGCCAGGAGAAGAAACTGTACCCAAGGATATCACTAATTTGGTTGGAAAGAAATTGTTGTTCAAAGTTGAAATTCCAGCTGATAACGGTTCTAGATTTGAACCATCTTATAGGGTTAAGAGAGTTACCCCTGATGAAGAAATGTTGCAGAAATTCGAAAACTCTTGCTCAGAGAATGATAATAGGATTCATACGTTAAACATATTGAGATCATTTTTTTTATTTGAAAGTCCAATACTTGTGCTTATTTATACAATCTCATTTTTTAAACTACTTTTTGTTCCTCGCGTACGAATTTCGGATTATTAA 1446 0.3838 MAANPKNTLISDVTENAHNLVLTVRVVRMWLVPEFSNPQKSHSLELVLQDSEGNRIHATAKKTLIYRFQKQIREDVVYIVSLFNVIKNTGEYRTTHHNFKIDILYDTKFERADNSVVPLTIYNFTTPAEIFQDAFNRDYLVDVIGVLTAVGKEREYVKNGVSTKINVIELDNNGYKYQCSLFGQYVDDLNSFLASGDSINAVVVVLFAKSKIFQRKPVLQNSINATKIMFNPDIPEALAFRASVAANEDSPPLVVSELRDTYKVSFEDDMLTLTPRTVIVDLKNCSEGSAHVVAATVDGMVESGTWWYSACQCNKKVYPADNMYFCEKCDRHVVNVTPRFCLKLRVKDDTSMSTFVVFDRDATLLLKKSCTEMIEASNMRPGEETVPKDITNLVGKKLLFKVEIPADNGSRFEPSYRVKRVTPDEEMLQKFENSCSENDNRIHTLNILRSFFLFESPILVLIYTISFFKLLFVPRVRISDY* 482
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal8g1310 481 SUPERFAMILY Nucleic acid-binding proteins 8 113 IPR012340 -
Mal8g1310 481 Pfam Replication factor-A C terminal domain 294 406 IPR013955 -
Mal8g1310 481 Pfam Domain of unknown function DUF223 45 140 IPR003871 -
Mal8g1310 481 PANTHER REPLICATION FACTOR A 1, RFA1 20 374 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Mal8g1310 481 SUPERFAMILY Nucleic acid-binding proteins 123 246 IPR012340 -
Mal8g1310 481 Gene3D - 269 433 IPR012340 -
Mal8g1310 481 CDD RPA1_DBD_C 293 424 IPR013955 -
Mal8g1310 481 CDD RPA1_DBD_B_like 142 244 - -
Mal8g1310 481 Gene3D - 7 114 IPR012340 -
Mal8g1310 481 SUPERFAMILY Nucleic acid-binding proteins 275 423 IPR012340 -
Mal8g1310 481 Gene3D - 117 251 IPR012340 -
Mal8g1310 481 CDD RPA1_DBD_A_like 24 109 - -
Mal8g1310 481 PANTHER ANIMAL RPA1 DOMAIN PROTEIN 20 374 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal8g1310 Mal-Chr8 24428505 24432227 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal8g1310 3 419 Core DNA Replication Machinery Family AT4G19130 22.422 2.01e-14 73.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal8g1310 - - mtr:MTR_2g048560 421.009