Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal8g1300 ATGGAGGGATCTTACTCTGATCAGTACTTGTTTTGGATGAAGAGAAGGCAAGTTCAAGCACCAATTGAATCTTGGGAAGAAAAAGCTTTTGCAGAAGATGCAGCTAGGAATATAGTGAATGGTAGCATGTGGCCACCAAGATTTTATTCATGTAACTTTTGTAAAAGAGAGTTTAGGTCTGCTCAAGCTCTTGGAGGTCACATGAATATTCATAGGAGAGATAGAGCTAGGCTCAAACAAAATCTTAGCCCTCAGAAGAACAATGATTTCATCAACTCATCACTAGGTAATCATTATTTTTCTGCAAAAATGTCATCAAAAATTGATTATAATTATCATCAACTTAAACCTTGTTCTAGCCTTGCAATAACTAGAAGAAGATCTCTCTCACCTTCTAGAATGATCTCAACTATTGTCAATGCTAATGATTGTGTTGAAACAAGTTTGTCTTTGGGAATGTTTGGAAAAAAGTCAACAAGTGTACTTTCTTGTGAGGAAAAAGGTAACATGAGCTGTAAGAGATTGAAGACATGTTCAAATGATCATAATAGGTTCTTGGCTTTTCAACAACCTTCAGAAATTGTACTTGGAGTTAATCATGGAATGGAAGATTTAGATCTTGAACTTAGGCTAGGGAAACAACAAAAAAGTTATTAA 657 0.3501 MEGSYSDQYLFWMKRRQVQAPIESWEEKAFAEDAARNIVNGSMWPPRFYSCNFCKREFRSAQALGGHMNIHRRDRARLKQNLSPQKNNDFINSSLGNHYFSAKMSSKIDYNYHQLKPCSSLAITRRRSLSPSRMISTIVNANDCVETSLSLGMFGKKSTSVLSCEEKGNMSCKRLKTCSNDHNRFLAFQQPSEIVLGVNHGMEDLDLELRLGKQQKSY* 219
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal8g1300 218 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 1 100 - -
Mal8g1300 218 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 141 216 - -
Mal8g1300 218 PANTHER OS07G0101800 PROTEIN 1 100 - -
Mal8g1300 218 Pfam C2H2-type zinc finger 49 73 - -
Mal8g1300 218 SUPERFAMILY beta-beta-alpha zinc fingers 46 75 IPR036236 -
Mal8g1300 218 ProSitePatterns Zinc finger C2H2 type domain signature. 51 71 IPR013087 -
Mal8g1300 218 ProSiteProfiles Zinc finger C2H2 type domain profile. 49 76 IPR013087 -
Mal8g1300 218 SMART c2h2final6 49 71 IPR013087 -
Mal8g1300 218 Gene3D Classic Zinc Finger 41 99 - -
Mal8g1300 218 PANTHER OS07G0101800 PROTEIN 141 216 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal8g1300 Mal-Chr8 24209246 24209902 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal8g1300 6 212 C2H2 Transcription Factor Family AT5G06070 35.526 1.12e-27 103
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Mal8g1300 zf-C2H2_6 2.2e-06 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal8g1300 - - lja:Lj0g3v0352099.1 193.741
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mal8g1300 8 24209246 24209902 Mal8g1300 8 24209246 24209902 ECH
Mal2g2829 2 37379360 37380302 Mal8g1300 8 24209246 24209902 PCT