Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mal8g1275 ATGCGCTATACCAACAACGAAGCTAAAAAATGGGTTGGAAGAGGTGAGGGAAGAGGAAGAAGGCCTAATAGGCCGAACGAGCATCCAGAAAGAAGAGAAAACAAGCTATTGGTCCCAAGGTGGGGATATCGGGGTAGACGACGCCCCAATTCTCGTAGATCAAGATATGTACAAAACCAAACACAAGAATTAAATAAGACCAATGAGGTTGAGCTTCACTTGCGGAAATGTATTATTGATAGGAATAATCTTGAAATTAATATGGAAAAGGCTAAACAAGATACTGGTCTGCATATCACATTATTTGTATTTAGAATTGCAATCTTGCCAGAAGTTAGAGAATCTGAAAATAAAGCTCGCTCTCAAGCTGAAATGCTGAAAAATGCTTTAGATGAACATGGTCTAGAGTTGAGAGTAAGAGCTGCTAGTGAGTCTGAAGCTGCTTGTGAACAAAGGCTTTCTGCCGCAGAAGCTGAAATAGAGGAGTTAAGGGCCCAGCTTGATGCAACTGAAAGAAAAAAATTCGAGATGAAAGAGGCTATTAAAGTTAAAGAGGCTGAGGCAGAAACCTATATATCTGAAATCGAGACTATTGGTCAAGCATATGAAGATATGCAGACACAGCACCAACATCTGTTGCAACAAGTGGCTGAGAGGGATGACTATAATATCAAGCTTGTATCAGAAAGCGTGAAGGCAAAACAATTACATAGCACTTTACTCTCTGAAAAGCATGCCTTAGCTGATCAACTTCAACAGATTAATTCTTTGATAGAAAATTCAAAGAAGAAGATTGCAAATAGTGAAGAACAGATCGAATGCATTCTATCAAAAGCCGCTAAATGTACTCAAGATGAAAAACACCTCGCAGCCGCCTTAGAGTTTGCCAGGTGGGAATTGGTTGATTCTGAGAAGGAGTTGAAGTTGCTCAAATCTGTTGCTTCAGCTTCAGAGAAAGAGTACGACCAAATTCTGAAAGATGTGGAAACTTTTGAAAAGGAATTGGAGAGTGAAAGGAGTTCACGGAAGAAAGAACTAATGGAAGTGAACAACCAAATTGCTGATCTGAATTCTGAAGCCAGAGAAACTAAAGTGCAACAACAACTTGAAGAAGAAATAAGAGTTTGTAAGAACATGATCAAGTGTACTGTCTGTTCTGACCGTCCAAAGGAGGTTGTGATTGTGAAGTGCTATCATCTGTTCTGCAATCCATGTATACAAAGAAATCTTGAGCTCCGTCACCGCAAATGTCCTGCCTGCGGAACAGCATTTGGACAGAGCGATGTTCGCTCTGTTAAAATATGA 1305 0.4 MRYTNNEAKKWVGRGEGRGRRPNRPNEHPERRENKLLVPRWGYRGRRRPNSRRSRYVQNQTQELNKTNEVELHLRKCIIDRNNLEINMEKAKQDTGLHITLFVFRIAILPEVRESENKARSQAEMLKNALDEHGLELRVRAASESEAACEQRLSAAEAEIEELRAQLDATERKKFEMKEAIKVKEAEAETYISEIETIGQAYEDMQTQHQHLLQQVAERDDYNIKLVSESVKAKQLHSTLLSEKHALADQLQQINSLIENSKKKIANSEEQIECILSKAAKCTQDEKHLAAALEFARWELVDSEKELKLLKSVASASEKEYDQILKDVETFEKELESERSSRKKELMEVNNQIADLNSEARETKVQQQLEEEIRVCKNMIKCTVCSDRPKEVVIVKCYHLFCNPCIQRNLELRHRKCPACGTAFGQSDVRSVKI* 435
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mal8g1275 434 ProSitePatterns Zinc finger RING-type signature. 397 406 IPR017907 -
Mal8g1275 434 SMART ring_2 382 420 IPR001841 -
Mal8g1275 434 MobiDBLite consensus disorder prediction 7 37 - -
Mal8g1275 434 Coils Coil 244 278 - -
Mal8g1275 434 MobiDBLite consensus disorder prediction 1 37 - -
Mal8g1275 434 CDD RING-HC_BRE1_like 380 421 - -
Mal8g1275 434 PANTHER RING FINGER PROTEIN-RELATED 111 434 IPR013956 GO:0004842|GO:0010390
Mal8g1275 434 SUPERFAMILY RING/U-box 381 425 - -
Mal8g1275 434 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 362 434 IPR013083 -
Mal8g1275 434 Coils Coil 314 366 - -
Mal8g1275 434 ProSiteProfiles Zinc finger RING-type profile. 382 420 IPR001841 -
Mal8g1275 434 Coils Coil 112 132 - -
Mal8g1275 434 Coils Coil 146 187 - -
Mal8g1275 434 Coils Coil 74 94 - -
Mal8g1275 434 Pfam Zinc finger, C3HC4 type (RING finger) 381 423 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mal8g1275 Mal-Chr8 23648895 23655391 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mal8g1275 382 429 RAD5 or RAD16-like Gene Family AT5G05130 35.417 6.44e-07 50.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mal8g1275 K10696 - gmx:100796610 474.167